5f55_A : 3D-footprint complex

structure name	STRUCTURE OF RECJ COMPLEXED WITH DNA (Single-stranded-DNA-specific exonuclease)
reference	Cheng et al. Elife 5 e14294 2016
source	Deinococcus radiodurans
experiment	X-ray (resolution=2.60, R-factor=0.187)
structural superfamily	DHH phosphoesterases;
sequence family	DHH family; DHHA1 domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5f55_A interface=80,114,224,265,268,269,349,352,353,356,373,393,400,485,492,494,496,515,517,524,526, msrpahwllappasrdallatmrewqvsppvaqvlcgrdlrtellalpleltpnpalreaarhivaavregkririhgdYdadgvsatatlvlglraiganvhgfiphrlnegYgihpdrvpehaaaadlvvtvdcgvsnldevksllatgtevvvtdhhapgenfpeclvvhphltpdydpdrhnltgagvayhllwavyeelgrpeprallplatlgtvadVapllgenralvraglaemartelpglralmnekrvrqptaRdvAFilaprinaagrmgeadralellttpsdheakslaayleirnqerrkiqddmfaqalqladpndpalvlthddwhagvmgIvaSKlvEtfnrpvyivaqgkgsvRstpgisavqglresrdllgRfgghpgAagfsldpqnfgalrerihgyvrqfptpvpavrldaplpvaaltpellselsilepfgegnprplwhlrgpltdtrlvgkqgdvlQfrfggvKgMkYserddaagerdvaaelalNeWkgrtslElHaaalrplaplalagteeglptlprlnpreamtflktgaaayaeqgvatylrdnvpgltlldtnaphpggdlilyglppesalrrwlheaqeqggrvafalgpktlaeldaaltlakllpdshteaaqeaaadayrswqwahhyrvlndagwsasvyamlglpvpaalpkaaealalaag
interface signature	YYVRAFISKERRAQKMYNWEH

Estimated binding specificities ?

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# IC=10.660 IC/col=1.066 n_of_columns=10

specificity:

A |   0  96   0   0   0  24  24   0   0   0
C |   0   0   0   0   0  24  24   0  96   0
G |  96   0   0  96   0  24  24  96   0   0
T |   0   0  96   0  96  24  24   0   0  96

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updated Fri Sep 13 19:33:17 2024