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structure nameSOLUTION NMR STRUCTURE OF THE WILD TYPE DNA BINDING DOMAIN OF AREA COMPLEXED TO A 13BP DNA CONTAINING A CGATA SITE, 35 STRUCTURES
(NITROGEN REGULATORY PROTEIN AREA)
sourceEMERICELLA NIDULANS
experimentNMR
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyGATA zinc finger;
redundant complexes7gat 6gat 4gat
reference complex4gat_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureLRLFLR

Estimated binding specificities ?

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# IC=3.101 IC/col=0.775 n_of_columns=4 specificity:   
A |  13   0  54   0
C |  54   0  13   0
G |  16  96  13   0
T |  13   0  16  96
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: AREA
CGATAGAGAGATAAPubMed5gat_A(1.03e-02)
term: CGATA
CGATAPubMed5gat_A(1.38e-04)
CAATCAPubMed6gat_A(8.80e-07), 7gat_A(3.65e-04)

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updated Thu Sep 12 21:19:42 2024