interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF NUCLEOSOME COMPLEX WITH HUMAN TESTIS-SPECIFIC HISTONE VARIANTS, TH2A
(HISTONE H2A TYPE 1-A)
referenceKumarevel et al. 'Biophys. 221 41 2017
sourceHOMO SAPIENS
experimentX-ray (resolution=2.82, R-factor=0.214)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes5gsu_ABCDEFGH 5gt0_ABCDEFGH
redundant complexes5gsu_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RT--             +-----------------------------8u14_G    
                 +-1 
  RG--         +-2 +-----------------------------8txv_G    
               ! ! 
  RA--       +-3 +-----------------------------7xsx_a    
             ! ! 
  RT--     --4 +-----------------------------8smw_G    
             ! 
  RGRG       +-----------------------------8kcb_A    
           

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updated Fri Sep 13 19:38:29 2024