Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING H3.6
referenceKurumizaka et al. Biochemistry 56 2184 2017
experimentX-ray (resolution=2.85, R-factor=0.221)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes5gxq_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RT--RG--------------                                    +6pww_K    
                                             +--------------1 
  --RG----------RT------             +------11              +8grq_A    
                                     !       !  
  --RG----------RG------             !       +--------------6iy2_A    
                                     !  
  HARA----LT----RC------             !                          +3kwq_E    
                                     !           +--------------4 
  --RG----LC----RT------             !        +-12              +8hr1_E    
                                     !        !  !  
  HARAYT--LT----RC------             !        !  +---------------4xzq_E    
                                     !        !  
  --RT----LA----RG------             !     +-15         +---------7unc_a    
                                     !     !  !  +------9 
  --------------RA------       +----19     !  !  !      !        +1zla_C    
                               !     !     !  +-13      +--------6 
  --------------RG------       !     !     !     !               +5x0y_G    
                               !     !     !     !  
  --RG----------RT------       !     !  +-16     +----------------7zs9_e    
                               !     !  !  !  
  --RCYA--------RG------       !     !  !  !          +---------7ccr_A    
                               !     !  !  !  +-------8 
  --------------RG------       !     !  !  !  !       +---------8ox0_C    
                               !     !  !  !  !  
  --------------RC------       !     !  !  +-14                 +7xyf_B    
                               !     !  !     !               +-5 
  ------------------KG--       !     !  !     !   +-----------7 +7nkx_f    
                             -20     +-18     !   !           ! 
  --------------RG------       !        !     +--10           +-8jla_C    
                               !        !         !  
  ------------IT--------       !        !         !             +3wkj_D    
                               !        !         +-------------2 
  ----------------RA----       !        !                       +6g0l_D    
                               !        !  
  HGRGYG--QC----RG------       !        !  +--------------------7y7i_E    
                               !        +-17  
  --------------RT------       !           !                    +7kbd_C    
                               !           +--------------------3 
  --------------RA----RA       !                                +6a5l_g    
                               !  
  ----------KT----------   L   +----------------------------7cvo_A    
                             

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updated Sun Aug 3 09:15:14 2025