5gxq_A : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING H3.6
reference	Kurumizaka et al. Biochemistry 56 2184 2017
experiment	X-ray (resolution=2.85, R-factor=0.221)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	5gxq_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5gxq_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellvrkLpfqrlvreiaqdfktdlRfqsaaigalqeaseaylvglfedtnlcaihakrvtimpkdiqlahsirger

  
  --RG----------RG--                       +-----------------------------6iy2_A    
                                         +-5 
  --RT----LA----RG--                   +-6 +-----------------------------7unc_a    
                                       ! ! 
  HARA----LT----RC--                 +-7 +-----------------------------3kwq_E    
                                     ! ! 
  --RT--RG----------               +-8 +-----------------------------6pww_K    
                                   ! ! 
  --RG----------RT--             +-9 +-----------------------------7zs9_e    
                                 ! ! 
  HARAYT--LT----RC--          +-10 +-----------------------------4xzq_E    
                              !  !  
  --RCYA--------RG--       +-11  +-----------------------------7ccr_A    
                           !  !  
  HGRGYG--QC----RG--       !  +-----------------------------7y7i_E    
                           !  
  --------------RC--       !                            +7xyf_B    
                         -12            +---------------1 
  ----------------KG       !        +---2               +7nkx_f    
                           !        !   ! 
  --------------RT--       !     +--3   +----------------7kbd_C    
                           !     !  ! 
  ------------IT----       +-----4  +--------------------3wkj_D    
                                 ! 
  ----------KT------   L         +-----------------------7cvo_A

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updated Fri Sep 13 19:41:37 2024