5j0n_FIJ : 3D-footprint complex

structure name	LAMBDA EXCISION HJ INTERMEDIATE
source	ESCHERICHIA COLI / ENTEROBACTERIA PHAGE LAMBDA
experiment	NMR
structural superfamily	DNA breaking-rejoining enzymes;DNA-binding domain;
reference complex	5j0n_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5j0n_F interface=1,3,17,19,20,21,25,27,34,95,96,99,100,103,138,139,142,145,235,284,286,287,288,291,337,338, MgRrrsherrdlppnlYiRNNgyyCyRdprtgkEfglgrdrriaiteaiqanielfsghkhkpltarinsdnsvtlhswldryekilasrgikqKTliNYmsKikairrglpdapledittkeiaamlngyidegkaASakLirStlsdafreaiaeghittnhvaatraaksevrrsrltadeylkiyqaaesspcwlrlamelavvtgqrvgdlcemkwsdivdgylyveqsKtgvkiaiptalhidalgismketldkckeilggetiiastrreplssgTvSRYfmRarkasglsfegdpptfhelrslsarlyekqisdkfaqhllghksdTMasqyrddrgrewdkieik > 5j0n_I interface=59,62,64,65,72, altkaemseylfdklglskrdakelvelffeeirralengeqvklsgfgnfdlrdknqRpgRnPKtgedipItarrvvtfrpgqklksrvenaspk > 5j0n_J interface=46,59,62,63,64,65, mtkselierlatqqshipaktvedavkemlehmastlaqgerieiRgfgsfslhyrapRtgRNPKtgdkvelegkyvphfkpgkelrdraniyg
interface signature	MRYRNNCREKTNYKASLSKTSRYRTM/RRPKI/RRRNPK

Estimated binding specificities ?

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# IC=25.732 IC/col=0.451 n_of_columns=57

specificity:

A |   0  96   1   6   5   1   0   0  24  24  24  24  24  24  24  24   1  96  92  24  51  24  24   0   0   6  83  24  24  24  24  24  96  96   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  88  24  24   0   0  96
C |   3   0   0   3   1  94  96   0  24  24  24  24  24  24  24  24  94   0   3  24   4  24  24   0   0   7   3  24  24  24  24  24   0   0   5  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4  24  24   0   0   0
G |   1   0  63   1  83   0   0   0  24  24  24  24  24  24  24  24   1   0   1  24  40  24  24   0   0  80   5  24  24  24  24  24   0   0   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3  24  24   0   0   0
T |  92   0  32  86   7   1   0  96  24  24  24  24  24  24  24  24   0   0   0  24   1  24  24  96  96   3   5  24  24  24  24  24   0   0  82  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   1  24  24  96  96   0

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updated Tue Sep 10 05:46:11 2024