5k5j_A : 3D-footprint complex

structure name	HOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF5-8 AND DNA COMPLEX STRUCTURE IN SPACE GROUP P41212 (Transcriptional repressor CTCF)
reference	Hashimoto et al. 'Mol. 66 711 2017
source	Homo sapiens
experiment	X-ray (resolution=2.29, R-factor=0.210)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5k5i_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5k5j_A interface=17,18,21,43,46,73,75,76,79, gspfqcslcsyasrdtYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgVhlrkqhsyieqgkkcrycdavfheryaliqhqksh
interface signature	YKRQTRSDV

Estimated binding specificities ?

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# IC=9.376 IC/col=1.042 n_of_columns=9

specificity:

A |   9   0  96  11   0  96   0   0   9
C |  69  96   0   9  96   0   0   0   9
G |   9   0   0  67   0   0  96  96  69
T |   9   0   0   9   0   0   0   0   9

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updated Thu Sep 12 21:38:15 2024