interface graph thumbnail
legend  pdf

structure nameHOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF6-8 AND H19 SEQUENCE DNA COMPLEX STRUCTURE
(Transcriptional repressor CTCF)
referenceHashimoto et al. 'Mol. 66 711 2017
sourceHomo sapiens
experimentX-ray (resolution=3.13, R-factor=0.238)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSD

Estimated binding specificities ?

readout + contactlogo
# IC=2.239 IC/col=0.560 n_of_columns=4 specificity:   
A |  19   0  10  10
C |  38  96   8  63
G |  19   0  70  10
T |  20   0   8  13
scan!

Dendrogram of similar interfaces ?

matrix format

home
updated Sun Aug 3 09:30:27 2025