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legend  pdf

structure nameHOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF6-8 AND H19 SEQUENCE DNA COMPLEX STRUCTURE
(Transcriptional repressor CTCF)
referenceHashimoto et al. 'Mol. 66 711 2017
sourceHomo sapiens
experimentX-ray (resolution=3.13, R-factor=0.238)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex5kkq_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSD

Estimated binding specificities ?

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# IC=3.663 IC/col=0.733 n_of_columns=5 specificity:   
A |   0   9   6   0   9
C |  90  13   9   0   6
G |   0  54   6   0  61
T |   6  20  75  96  20
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updated Fri Jan 9 03:51:27 2026