interface graph thumbnail
legend  pdf

structure nameHOMO SAPIENS CCCTC-BINDING FACTOR (CTCF) ZNF6-8 AND H19 SEQUENCE DNA COMPLEX STRUCTURE
(Transcriptional repressor CTCF)
referenceHashimoto et al. 'Mol. 66 711 2017
sourceHomo sapiens
experimentX-ray (resolution=3.13, R-factor=0.238)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex5kkq_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSD

Estimated binding specificities ?

contactlogo
# IC=3.816 IC/col=0.763 n_of_columns=5 specificity:   
A |   8  96  69  18   0
C |  52   0   8  61   0
G |  19   0  11   0  96
T |  17   0   8  17   0
scan!

home
updated Sun Jun 28 13:21:42 2026