5t00_D : 3D-footprint complex

structure name	HUMAN CTCF ZNF3-7 AND METHYLATED DNA COMPLEX (Transcriptional repressor CTCF)
reference	Hashimoto et al. 'Mol. 66 711 2017
source	Homo sapiens
experiment	X-ray (resolution=2.19, R-factor=0.220)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5t00_D interface=12,15,18,22,41,44,47,69,71,72,75,97,100,127,129,130,133, hkcpdcdmafvTsgElvRhrrYkhthekpfkcsmcdyasvEvsKlkRhirshtgerpfqcslcsyasrDtYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgVhlrkqhsyie
interface signature	TERYEKRDYKRQTRSDV

Estimated binding specificities ?

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# IC=15.573 IC/col=1.112 n_of_columns=14

specificity:

A |   0  89   9   0  96   0   0   0   0   0   6   0   6   9
C |  96   1   6  96   0   0   0   0   0   0   6   0  75   6
G |   0   6  75   0   0  96  96  96  96  96   6  96   9   6
T |   0   0   6   0   0   0   0   0   0   0  78   0   6  75

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updated Tue Dec 17 02:29:15 2024