interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HISTONE-BASED CHROMATIN IN ARCHAEA
(DNA-binding protein HMf-2)
referenceBhattacharyya et al. Science 357 609 2017
sourceMethanothermus fervidus
experimentX-ray (resolution=4.00, R-factor=0.216)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4; TATA box binding protein associated fac 05;
multimeric complexes5t5k_ABCDEF
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA--                                   +8rbx_M    
                              +--------------2 
  ----RT--                  +-6              +6px1_A    
                            ! ! 
  ----RC--                  ! +--------------7ux9_E    
                     +------7 
  ----RT--           !      !     +----------8u14_G    
                     !      !     ! 
  ----RGRG           !      +-----5            +8kcb_A    
                     !            !          +-1 
  ----RARA       +---9            +----------3 +6a5l_g    
                 !   !                       ! 
  HGRTRG--       !   !                       +8rbx_V    
                 !   ! 
  ----RG--       !   !                      +8txv_G    
               -10   !   +------------------4 
  ----RC--       !   +---8                  +7yqk_C    
                 !       ! 
  ----RA--       !       +-------------------7e9c_F    
                 !  
  ----RG--       +---------------------------8upf_G    
               

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updated Sat Jan 10 08:53:40 2026