interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HISTONE-BASED CHROMATIN IN ARCHAEA
(DNA-binding protein HMf-2)
referenceBhattacharyya et al. Science 357 609 2017
sourceMethanothermus fervidus
experimentX-ray (resolution=4.00, R-factor=0.216)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4; TATA box binding protein associated fac 05;
multimeric complexes5t5k_ABCDEF
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RT--             +-----------------------------8u14_G    
                 +-1 
  RG--         +-2 +-----------------------------8txv_G    
               ! ! 
  RGRG       +-3 +-----------------------------8kcb_A    
             ! ! 
  RT--     --4 +-----------------------------8smw_G    
             ! 
  RA--       +-----------------------------8rbx_M    
           

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updated Fri Sep 13 20:27:09 2024