interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF HISTONE-BASED CHROMATIN IN ARCHAEA
(DNA-binding protein HMf-2)
referenceBhattacharyya et al. Science 357 609 2017
sourceMethanothermus fervidus
experimentX-ray (resolution=4.00, R-factor=0.216)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4; TATA box binding protein associated fac 05;
multimeric complexes5t5k_ABCDEF
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG----       +-----------------------------5x0y_G    
                 !  
  --RT----       !                             +8smw_G    
                 !            +----------------1 
  --RG----       !            !                +8ox0_C    
                 !            ! 
  --RA----       !         +--9                +8rbx_M    
                 !         !  !  +-------------3 
  --RT----     -12         !  !  !             +8grq_A    
                 !         !  +--8 
  --RA----       !         !     !            +1zla_C    
                 !      +-10     +------------4 
  --RG----       !      !  !                  +8jla_C    
                 !      !  !  
  --RG--RG       !      !  !                   +8kcb_A    
                 !      !  !      +------------2 
  --RA--RA       !      !  !      !            +6a5l_g    
                 +-----11  +------7 
  --RG----              !         !  +---------8txv_G    
                        !         +--5 
  ----RA--              !            +---------6g0l_D    
                        !  
  --RT----              !          +-----------8u14_G    
                        +----------6 
  LCRT----                         +-----------8hr1_E    
               

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updated Sun Aug 3 10:00:39 2025