5t7x_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HHV-4 EBNA1 DNA BINDING DOMAIN (PATIENT-DERIVED, NASOPHARYNGEAL CARCINOMA) BOUND TO DNA
reference	Lieberman et al. Oncotarget 8 7248 2017
source	Human herpesvirus 4 (strain B95-8) / Human herpesvirus 4 (strain B95-8) / Human herpesvirus 4 (strain B95-8) / Human herpesvirus 4 (strain B95-8)
experiment	X-ray (resolution=2.35, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5t7x_A interface=4,5,9,17,18,54,55,58,59,62, kggWFgkhRgqggsnpKFeniaeglrvllarshvertteegnwvagvfvyggsKTslYNlrRgialavpqcritplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmikpaptcnikvtvcsfddgvdlp > 5t7x_B interface=3,6,7,19,56,57,60,61,64, rkKggWFgkhrgqggsnpKfeniaeglrvllarshvertteegnwvagvfvyggsKTslYNlrRgialavpqcritplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmikpaptcnikvtvcsfddgvdlp
interface signature	WFRKFKTYNR/KWFKKTYNR

Estimated binding specificities ?

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# IC=15.334 IC/col=0.852 n_of_columns=18

specificity:

A |   0   0  93   0  92  10   2  24  24  24   8   0  10   2  83   0   0   0
C |   2   0   1   2   2   8  81  24  24  24  10   2  70   0   0  96  96  92
G |  92  96   2   0   0  68   0  24  24  24  12  91   6   1  12   0   0   2
T |   2   0   0  94   2  10  13  24  24  24  66   3  10  93   1   0   0   2

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updated Sat Dec 14 07:03:41 2024