5t7x_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HHV-4 EBNA1 DNA BINDING DOMAIN (PATIENT-DERIVED, NASOPHARYNGEAL CARCINOMA) BOUND TO DNA
reference	Lieberman et al. Oncotarget 8 7248 2017
source	Human herpesvirus 4 (strain B95-8) / Human herpesvirus 4 (strain B95-8) / Human herpesvirus 4 (strain B95-8) / Human herpesvirus 4 (strain B95-8)
experiment	X-ray (resolution=2.35, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	5t7x_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5t7x_A interface=4,5,9,17,18,54,55,58,59,62, kggWFgkhRgqggsnpKFeniaeglrvllarshvertteegnwvagvfvyggsKTslYNlrRgialavpqcritplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmikpaptcnikvtvcsfddgvdlp > 5t7x_B interface=3,6,7,19,56,57,60,61,64, rkKggWFgkhrgqggsnpKfeniaeglrvllarshvertteegnwvagvfvyggsKTslYNlrRgialavpqcritplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmikpaptcnikvtvcsfddgvdlp
interface signature	WFRKFKTYNR/KWFKKTYNR

Estimated binding specificities ?

readout + contact

# IC=15.242 IC/col=0.847 n_of_columns=18

specificity:

A |   1   0  93   0  96   2   2  24  24  24   9   3   4   2  74   0   0   1
C |   2   0   0   3   0   8  84  24  24  24  13   2  72   3   3  96  96  91
G |  91  96   3   0   0  82   2  24  24  24  13  89   6   2  17   0   0   2
T |   2   0   0  93   0   4   8  24  24  24  61   2  14  89   2   0   0   2

scan!

home
updated Tue Sep 10 08:35:13 2024