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legend  pdf

structure nameKAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A DOUBLE CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
(Transcriptional regulator Kaiso)
referenceMartinez-Yamout et al. Biochemistry 57 2109 2018
sourceHomo sapiens
experimentX-ray (resolution=2.35, R-factor=0.182)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex2lt7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSREYNYQRY

Estimated binding specificities ?

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# IC=1.934 IC/col=0.242 n_of_columns=8 specificity:   
A |  12  24  24  24  24   0  19  56
C |  12  24  24  24  24   0  19  13
G |  12  24  24  24  24  96  38  13
T |  60  24  24  24  24   0  20  14
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updated Tue Dec 17 02:39:27 2024