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legend  pdf

structure nameKAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A DOUBLE CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
(Transcriptional regulator Kaiso)
referenceMartinez-Yamout et al. Biochemistry 57 2109 2018
sourceHomo sapiens
experimentX-ray (resolution=2.35, R-factor=0.182)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex2lt7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSREYNYQRY

Estimated binding specificities ?

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# IC=6.881 IC/col=0.860 n_of_columns=8 specificity:   
A |  10  15   0   7   0   2   5  96
C |  12  77  96  33   0  92  33   0
G |  10   2   0   7  96   2  51   0
T |  64   2   0  49   0   0   7   0
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updated Mon Dec 18 13:43:50 2023