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legend  pdf

structure nameKAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A DOUBLE CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
(Transcriptional regulator Kaiso)
referenceMartinez-Yamout et al. Biochemistry 57 2109 2018
sourceHomo sapiens
experimentX-ray (resolution=2.35, R-factor=0.182)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex2lt7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSREYNYQRY

Estimated binding specificities ?

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# IC=1.934 IC/col=0.242 n_of_columns=8 specificity:   
A |  13  19   0  24  24  24  24  60
C |  14  38  96  24  24  24  24  12
G |  13  19   0  24  24  24  24  12
T |  56  20   0  24  24  24  24  12
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updated Thu Sep 12 22:08:46 2024