interface graph thumbnail
legend  pdf

structure nameKAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A DOUBLE CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
(Transcriptional regulator Kaiso)
referenceMartinez-Yamout et al. Biochemistry 57 2109 2018
sourceHomo sapiens
experimentX-ray (resolution=2.40, R-factor=0.180)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex2lt7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSREYNYQRY

Estimated binding specificities ?

readout + contactlogo
# IC=3.101 IC/col=0.388 n_of_columns=8 specificity:   
A |  16  24  24  24  24   0  13  96
C |  13  24  24  24  24   0  13   0
G |  13  24  24  24  24  96  54   0
T |  54  24  24  24  24   0  16   0
scan!

home
updated Tue Dec 17 02:39:40 2024