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legend  pdf

structure nameKAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A HEMI CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
(Transcriptional regulator Kaiso)
referenceMartinez-Yamout et al. Biochemistry 57 2109 2018
sourceHomo sapiens
experimentX-ray (resolution=2.05, R-factor=0.165)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex2lt7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSREYKNYQFRY

Estimated binding specificities ?

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# IC=7.625 IC/col=0.953 n_of_columns=8 specificity:   
A |   0   0   7   0   9   0   9  73
C |   0  96   7  96   7   0   7   9
G |   0   0  75   0  73  96  73   7
T |  96   0   7   0   7   0   7   7
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updated Thu Sep 12 22:09:07 2024