interface graph thumbnail
legend  pdf

structure nameKAISO (ZBTB33) ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH A HEMI CPG-METHYLATED DNA RESEMBLING THE SPECIFIC KAISO BINDING SEQUENCE (KBS)
(Transcriptional regulator Kaiso)
referenceMartinez-Yamout et al. Biochemistry 57 2109 2018
sourceHomo sapiens
experimentX-ray (resolution=2.05, R-factor=0.165)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex2lt7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTSREYKNYQFRY

Estimated binding specificities ?

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# IC=9.029 IC/col=0.821 n_of_columns=11 specificity:   
A |   0  24  24   7  14   0   7   0   7   0  96
C |   0  24  24   7  75  96  23   0  82   0   0
G |  96  24  24  14   0   0   7  96   7  96   0
T |   0  24  24  68   7   0  59   0   0   0   0
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updated Tue Dec 17 02:39:47 2024