interface graph thumbnail
legend  pdf

structure nameAPOBEC3F CATALYTIC DOMAIN COMPLEX WITH A SINGLE-STRANDED DNA
referenceChen et al. 'J. 430 87 2018
sourceHomo sapiens
experimentX-ray (resolution=3.70, R-factor=?)
structural superfamilyCytidine deaminase-like;
reference complex5w2m_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYPPLK/YKPFPKLKY/YKKLKY

Estimated binding specificities ?

contactlogo
# IC=9.385 IC/col=1.043 n_of_columns=9 specificity:   
A |   0   0  19  24   0   0   0   0   0
C |   0   0  19  24   0   0   0   0   0
G |   0   0  19  24   0   0   0   0   0
T |  96  96  39  24  96  96  96  96  96
scan!

home
updated Tue Sep 10 09:19:35 2024