5w2m_JKL : 3D-footprint complex

structure name	APOBEC3F CATALYTIC DOMAIN COMPLEX WITH A SINGLE-STRANDED DNA
reference	Chen et al. 'J. 430 87 2018
source	Homo sapiens
experiment	X-ray (resolution=3.70, R-factor=?)
structural superfamily	Cytidine deaminase-like;
reference complex	5w2m_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5w2m_J interface=144,161,164,168,169, npmeamyphifyfhfknlrkaygrneswlcftmevvkhhspvswkrgvfrnqvdpethchaercflswfcddilspntnyevtwytswspcpecagevaeflarhsnvnltiftarlyyfwdtdyqeglrslsqegasveimgYkdfkycwenfvynddePfkPwkgLKynflfldsklqeile > 5w2m_K interface=144,148,161,162,164,166,168,169,170, npmeamyphifyfhfknlrkaygrneswlcftmevvkhhspvswkrgvfrnqvdpethchaercflswfcddilspntnyevtwytswspcpecagevaeflarhsnvnltiftarlyyfwdtdyqeglrslsqegasveimgYkdfKycwenfvynddePFkPwKgLKYnflfldsklqeile > 5w2m_L interface=144,163,166,168,169,170, npmeamyphifyfhfknlrkaygrneswlcftmevvkhhspvswkrgvfrnqvdpethchaercflswfcddilspntnyevtwytswspcpecagevaeflarhsnvnltiftarlyyfwdtdyqeglrslsqegasveimgYkdfkycwenfvynddepfKpwKgLKYnflfldsklqeile
interface signature	YPPLK/YKPFPKLKY/YKKLKY

Estimated binding specificities ?

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# IC=9.385 IC/col=1.043 n_of_columns=9

specificity:

A |   0   0  19  24   0   0   0   0   0
C |   0   0  19  24   0   0   0   0   0
G |   0   0  19  24   0   0   0   0   0
T |  96  96  39  24  96  96  96  96  96

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updated Tue Sep 10 09:19:47 2024