5w64_ABPQ : 3D-footprint complex

structure name	RNA POLYMERASE I INITIAL TRANSCRIBING COMPLEX STATE 1
experiment	NMR
reference complex	5w5y_P 5w5y_Q
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5w64_A interface=403,514,935,936,940, mdiskpvgseitsvdfgiltakeirnlsakqitnptvldnlghpvsgglydlalgaflrnlcstcgldekfcpghqghielpvpcynplffnqlyiylrasclfchhfrlksvevhryacklrllqyglidesykldeitldisstllnelkskrseyvdmaiakalsdgrttergsftatvnderkklvhefhkkllsrgkcdncgmfspkfrkdgftkifetalnekqitnnrvkgstyilstevknildtvfrkeqcvlqyvfhsrpnlsrklvkadsffmdvlvvpptrfrlpsklgeevhensqnqllskvlttsllirdlnddlsklqkdkvsledrrvifsrlmnafvtiqndvnafidstkaqkvpipgvkqalekkeglfrkhmmgkrvnyaaRsvispdpnietneigvppvfavkltypepvtayniaelrqavingpdkwpgatqiqnedgslvsligmsveqrkalanqlltpssnvsthtlnkkvyrhiknrdvvlmnrQptlhkasmmghkvrvlpnektlrlhyantgaynadfdgdemnmhfpqnenaraealnlantdsqyltptsgspvrgliqdhisagvwltskdsfftreqyqqyiygcirpedghttrskivtlpptifkpyplwtgkqiittvllnvtppdmpginlisknkikneywgkgslenevlfkdgallcgildksqygaskygivhslhevygpevaakvlsvlgrlftnyitataftcgmddlrltaegnkwrtdilktsvdtgreaaaevtnldkdtpaddpellkrlqeilrdnnksgildavtsskvnaitsqvvskcvpdgtmkkfpcnsmqamalsgakgsnvnvsqimcllgqqalegrrvpvmvsgktlpsfkpyetdamaggyvkgrfysgikpqeyyfhcmagreglidtavkTSrsgYlqrcltkqlegvhvsydnsirdadgtlvqfmyggdaiditkeshmtqfefcldnyyallkkynpsaliehldvesalkyskktlkyrkkhsphykqsvkydpvlakynpakylgsvsenfqdklesfldknsklfkssdgvnekkfralmqlkymrslinpgeavgiiasqsvgepstqmnvtlgiprlreivmtasaaiktpqmtlpiwndvsdeqadtfcksiskvllsevidkvivtettaarsyvihmrffdnneyseeydvskeelqnvisnqfihlleaaivkeikkqknmnkvqrdrqsaiishhrfitkynfddesgkwcefklelaadtekllmvniveeicrksiirqiphidrcvhpepengkrvlvtegvnfqamwdqeafidvdgitsndvaavlktygveaarntivneinnvfsryaisvsfrhldliadmmtrqgtylafnrqgmetstssfmkmsyettcqfltkavldnereqldspsarivvgklnnvgtgsfdvlakvpna > 5w64_B interface=438,440,441,443,444,447,448,451,453,492,495,801,1027,1048, rtadfrtleresrfinppkdksafpllqeavqphigsfnaltegpdggllnlgvkdigekvifdgkplnsnsgylgnklsvsveqvsiakpmsndgvssaverkvypsesrqrltsyrgklllklkwsvnngeenlfevrdcgglpvmlqsnrchlnkmspyelvqhkeesdeiggyfivngieklirmlivqrrnhpmaiirpsfanrgasyshygiqirsvrpdqtsqtnvlhylndgqvtfrfswrkneylvpvvmilkalchtsdreifdgiigndvkdsfltdrlelllrgfkkryphlqnrtqvlqylgdkfrvvfqaspdqsdlevgqevldrivlvhlgkdgsqdkfrmllfmirklyslvagecspdnpdatqhqevllggflygmilkekideylqniiaqvrmdinrgmainfkdkrymsrvlmrvNeNIgSKmqYFlsTgNlvsqsgldlqqvsgytvvaekinfyrfishfrmvhrgsFfaQlktttvrkllpeswgflcpvhtpdgspcgllnhfahkcristqqsdvsripsilyslgvapashtfaagpslccvqidgkiigwvsheqgkiiadtlrywkvegktpglpidleigyvppstrgqypglylfgghsrmlrpvrylpldkedivgpfeqvymniavtpqeiqnnvhthveftptnilsilanltpfsdfnqsprnmyqcqmgkqtmgtpgvalchrsdnklyrlqtgqtpivkanlyddygmdnfpngfnavvavisytgydmddamiinksadergfgygtmyktekvdlalnrnRgdpitqhfgfgndewpkewlekldedglpyigtyveegdpicayfddtlnktkiktyhssepayieevnligdesnkfqelqtvsikyrirrtpqigdkfssrhgqkgvcsrkwptidmpfsetgiqpdiiinphafpsrmtigmfveslagkagalhgiaqdstpwifneddtpadyfgeqlakagynyhgnepmysgatgeelradiyvgvvyyqrlrhmvndKfqvrstgpvnsltmqpvkgrKrhggirvgemerdalighgtsfllqdrllnssdytqasvcrecgsilttqqsvprigsistvccrrcsmrfedakklltedgekifiddsqiwedgqgnkfvggnetttvaipfvlkyldselsamgirl > 5w64_P interface=117,121,201,202, kligheakllflksfqfilkrqirwlitemrfpkefehvakiiwlkilktindqpqeelklqlhmtstisilylasthlslpvytcdyikwictakmpyfqaseilpkswriqlpnYyvsIlegsispfngqlynkialtcgmihfkeffnseiscqglllklvmqcalppefyfytkqviefeetdirnltlwertderHTgrvsnhaelrvlsyfmltinwmlsfdrdrqyplkwilsltesltqrtttsesigrnivkvvypdkptssdyfqwseeetleflkwmekqflptqtsmemtidqkiarrklykifpldredthqltfiedlqeryakqtpffpparkeaigrllthiasqllvdfaiskeqlkdcisriknaclhr > 5w64_Q interface=10,11,204, mfevpitltNRkfaqrrklkyqyinyisrrfdrisksdeerkfwkkyekpeksfeiwrtvssqnkqpinkqkmtyhnfkkiekiplrkmeipllhctkenklyfqsisrgleplktstsevrnyrtrhivtltdllhlnvsrhnwslaykifatliripgvqikslwgigveildnlsnsssgldflqwmcqiyssksrfvqnInyrsivppfqtgsrthtakfaitylwsslincqksmeptendllqelidkisewvltppfmedaevwfiyaschllkadtlsrqfvndnknndligldrdikinqvikhihyvrtflkicldkggfavpsrlienqlksfesrly
interface signature	RQTSY/NNISKYFTNFQRKK/YIHT/NRI

Estimated binding specificities ?

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# IC=13.684 IC/col=0.380 n_of_columns=36

specificity:

A |   0   0   1   0  12  24  24  24  24  24  24   0   0  24  24  24  24  10  10  24  24  24  24  24  24  24  24  24   0  10  12  24  24  24  96   0
C |   0   0   2  96  10  24  24  24  24  24  24   0   0  24  24  24  24  64  64  24  24  24  24  24  24  24  24  24   0  14  67  24  24  24   0  96
G |   0   0   0   0  59  24  24  24  24  24  24  96   0  24  24  24  24  12  12  24  24  24  24  24  24  24  24  24   0  10   7  24  24  24   0   0
T |  96  96  93   0  15  24  24  24  24  24  24   0  96  24  24  24  24  10  10  24  24  24  24  24  24  24  24  24  96  62  10  24  24  24   0   0

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updated Tue Sep 10 09:25:48 2024