5w65_ABPQ : 3D-footprint complex

structure name	RNA POLYMERASE I INITIAL TRANSCRIBING COMPLEX STATE 2
experiment	NMR
reference complex	5w5y_P 5w5y_Q
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5w65_A interface=305,403,514,515,935,936,940,1134,1414, mdiskpvgseitsvdfgiltakeirnlsakqitnptvldnlghpvsgglydlalgaflrnlcstcgldekfcpghqghielpvpcynplffnqlyiylrasclfchhfrlksvevhryacklrllqyglidesykldeitldisstllnelkskrseyvdmaiakalsdgrttergsftatvnderkklvhefhkkllsrgkcdncgmfspkfrkdgftkifetalnekqitnnrvkgstyilstevknildtvfrkeqcvlqyvfhsrpnlsrklvkadsffmdvlvvpptrfrlpsklgeevHensqnqllskvlttsllirdlnddlsklqkdkvsledrrvifsrlmnafvtiqndvnafidstkaqkvpipgvkqalekkeglfrkhmmgkrvnyaaRsvispdpnietneigvppvfavkltypepvtayniaelrqavingpdkwpgatqiqnedgslvsligmsveqrkalanqlltpssnvsthtlnkkvyrhiknrdvvlmnrQPtlhkasmmghkvrvlpnektlrlhyantgaynadfdgdemnmhfpqnenaraealnlantdsqyltptsgspvrgliqdhisagvwltskdsfftreqyqqyiygcirpedghttrskivtlpptifkpyplwtgkqiittvllnvtppdmpginlisknkikneywgkgslenevlfkdgallcgildksqygaskygivhslhevygpevaakvlsvlgrlftnyitataftcgmddlrltaegnkwrtdilktsvdtgreaaaevtnldkdtpaddpellkrlqeilrdnnksgildavtsskvnaitsqvvskcvpdgtmkkfpcnsmqamalsgakgsnvnvsqimcllgqqalegrrvpvmvsgktlpsfkpyetdamaggyvkgrfysgikpqeyyfhcmagreglidtavkTSrsgYlqrcltkqlegvhvsydnsirdadgtlvqfmyggdaiditkeshmtqfefcldnyyallkkynpsaliehldvesalkyskktlkyrkkhsphykqsvkydpvlakynpakylgsvsenfqdklesfldknsklfkssdgvnekkfralmqlkymrslinpgeavgiiasqsvgepstqmnvtlgiprlreivMtasaaiktpqmtlpiwndvsdeqadtfcksiskvllsevidkvivtettaarsyvihmrffdnneyseeydvskeelqnvisnqfihlleaaivkeikkqknmnkvqrdrqsaiishhrfitkynfddesgkwcefklelaadtekllmvniveeicrksiirqiphidrcvhpepengkrvlvtegvnfqamwdqeafidvdgitsndvaavlktygveaarntivneinnvfsryaisvsfrhldliadmmtrqgtylafnrqgmetstssfmkmsyEttcqfltkavldnereqldspsarivvgklnnvgtgsfdvlakvpna > 5w65_B interface=463,492,495,801, rtadfrtleresrfinppkdksafpllqeavqphigsfnaltegpdggllnlgvkdigekvifdgkplnsnsgylgnklsvsveqvsiakpmsndgvssaverkvypsesrqrltsyrgklllklkwsvnngeenlfevrdcgglpvmlqsnrchlnkmspyelvqhkeesdeiggyfivngieklirmlivqrrnhpmaiirpsfanrgasyshygiqirsvrpdqtsqtnvlhylndgqvtfrfswrkneylvpvvmilkalchtsdreifdgiigndvkdsfltdrlelllrgfkkryphlqnrtqvlqylgdkfrvvfqaspdqsdlevgqevldrivlvhlgkdgsqdkfrmllfmirklyslvagecspdnpdatqhqevllggflygmilkekideylqniiaqvrmdinrgmainfkdkrymsrvlmrvnenigskmqyflstgnlvsqsgldlQqvsgytvvaekinfyrfishfrmvhrgsFfaQlktttvrkllpeswgflcpvhtpdgspcgllnhfahkcristqqsdvsripsilyslgvapashtfaagpslccvqidgkiigwvsheqgkiiadtlrywkvegktpglpidleigyvppstrgqypglylfgghsrmlrpvrylpldkedivgpfeqvymniavtpqeiqnnvhthveftptnilsilanltpfsdfnqsprnmyqcqmgkqtmgtpgvalchrsdnklyrlqtgqtpivkanlyddygmdnfpngfnavvavisytgydmddamiinksadergfgygtmyktekvdlalnrnRgdpitqhfgfgndewpkewlekldedglpyigtyveegdpicayfddtlnktkiktyhssepayieevnligdesnkfqelqtvsikyrirrtpqigdkfssrhgqkgvcsrkwptidmpfsetgiqpdiiinphafpsrmtigmfveslagkagalhgiaqdstpwifneddtpadyfgeqlakagynyhgnepmysgatgeelradiyvgvvyyqrlrhmvndkfqvrstgpvnsltmqpvkgrkrhggirvgemerdalighgtsfllqdrllnssdytqasvcrecgsilttqqsvprigsistvccrrcsmrfedakklltedgekifiddsqiwedgqgnkfvggnetttvaipfvlkyldselsamgirl > 5w65_P interface=46,49,210,214,294, mstfirgpicgtdncpsrlwriidgrrtcqyghvmegdvefnddeDdlNglgagvitrrlnlttnatgsfqssqltnsqllqqqqrqshkkfkkligheakllflksfqfilkrqirwlitemrfpkefehvakiiwlkilktindqpqeelklqlhmtstisilylasthlslpvytcdyikwictakmpyfqaseilpkswriqlpnYyvsIlegsispfngqlynkialtcgmihfkeffnseiscqglllklvmqcalppefyfytkqviefeetdirnltlwertderHtgrvsnhaelrvlsyfmltinwmlsfdrdrqyplkwilsltesltqrtttsesigrnivkvvypdkptssdyfqwseeetleflkwmekqflptqtsmemtidqkiarrklykifpldredsthqltfiedlqeryakqtpffpparkeaigrllthiasqllvdfaiskeqlkdcisriknaclhr > 5w65_Q interface=10,11,200,204, mfevpitltNRkfaqrrklkyqyinyisrrfdrisksdeerkfwkkyekpeksfeiwrtvssqnkqpinkqkmtyhnfkkiekiplrkmeipllhctkenklyfqsisrgleplktstsevrnyrtrhivtltdllhlnvsrhnwslaykifatliripgvqikslwgigveildnlsnsssgldflqwmcqiyssksrFvqnInyrsivppfqtgsrthtakfaitylwsslincqksmeptendllqelidkisewvltppfmedaevwfiyaschllkadtlsrqfvndnknndligldrdikinqvikhihyvrtflkicldkggfavpsrlienqlksfesrly
interface signature	HRQPTSYME/QFQR/DNYIH/NRFI

Estimated binding specificities ?

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# IC=14.761 IC/col=0.410 n_of_columns=36

specificity:

A |   3   0  24  24  24  11  84  24  24  24  24  24  24  24  24  11  24   7   0   0  24  24  24  24   6  24   0  24   0  24  24  24  24   0  96  96
C |   3   0  24  24  24   7   3  24  24  24  24  24  24  24  24   9  24  11   0   0  24  24  24  24   3  24   0  24  96  24  24  24  24   0   0   0
G |  87   0  24  24  24  65   6  24  24  24  24  24  24  24  24  11  24  75  96   0  24  24  24  24   3  24   0  24   0  24  24  24  24  96   0   0
T |   3  96  24  24  24  13   3  24  24  24  24  24  24  24  24  65  24   3   0  96  24  24  24  24  84  24  96  24   0  24  24  24  24   0   0   0

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updated Tue Sep 10 09:28:33 2024