| structure name | CRYSTAL STRUCTURE OF CTCF ZFS6-11-GB7CSE (Transcriptional repressor CTCF) |
| reference | Wang et al. 'Cell 27 1365 2017 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.96, R-factor=0.269) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| reference complex | 5kkq_D |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | TRSDQRHMQLLTR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 0 24 3 4 96 0 17 24 24 24 24 24 24 24 24 3 0 61 3 1 C | 0 0 96 24 6 0 0 96 78 24 24 24 24 24 24 24 24 73 96 15 4 3 G | 0 96 0 24 43 3 0 0 0 24 24 24 24 24 24 24 24 17 0 3 89 3 T | 96 0 0 24 44 89 0 0 1 24 24 24 24 24 24 24 24 3 0 17 0 89scan! |
Dendrogram of similar interfaces ?
matrix format------TG--RA--SCDC------QGRGHTMG--QG----LGLC--TTRG---------- L +---------------5yel_A ! ------------------------QAATHG----RG--DCNA--TT--RGRTDAAT---- L +-4 +2i13_A ! ! +--1 ------------------------WCSCVGRG--DC--SGNA----------STHG--RG L ! +------------2 +5v3g_A +------5 ! ------------------------DGYCKGRGTCQA----TC------RA--SCDC---- L ! ! +--5t0u_A ! ! ------------------------RA--NC------ATSGDC--KG--DCPTSGSARTKG L +---6 ! +-------------2gli_A ! ! +--3 RGSTYGYC--QC--TGSTRAYT-------------------------------------- L ! ! +-------------3uk3_C --7 ! --NTSTNAVTQTSTSGKG--RGKG------------------------------------ L ! +-----------------------6u9q_A ! ----------RG--SGDC------------------------------------------ L +---------------------------5k5l_F |
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updated Fri Jan 9 05:03:04 2026