| structure name | CRYSTAL STRUCTURE OF CTCF ZFS6-11-GB7CSE (Transcriptional repressor CTCF) |
| reference | Wang et al. 'Cell 27 1365 2017 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.96, R-factor=0.269) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | TRSDQRHMQLLTR |
Estimated binding specificities ?
| readout + contact |  |
A | 2 0 0 24 6 4 94 0 24 24 24 24 24 24 24 24 24 6 0 68 6 0 C | 0 0 96 24 6 2 0 96 72 24 24 24 24 24 24 24 24 80 96 6 4 4 G | 2 96 0 24 54 4 2 0 0 24 24 24 24 24 24 24 24 6 0 12 84 0 T | 92 0 0 24 30 86 0 0 0 24 24 24 24 24 24 24 24 4 0 10 2 92scan! |
Dendrogram of similar interfaces ?
matrix format------TG--RA--SCDC------QGRGHTMG--QG----LGLC--TTRG---------- L +---------------5yel_A ! ------------------------QAATHG----RG--DCNA--TT--RGRTDAAT---- L +-4 +2i13_A ! ! +--1 ------------------------WCSCVGRG--DC--SGNA----------STHG--RG L ! +------------2 +5v3g_A +------5 ! ------------------------DGYCKGRGTCQA----TC------RA--SCDC---- L ! ! +--5t0u_A ! ! ------------------------RA--NC------ATSGDC--KG--DCPTSGSARTKG L +---6 ! +-------------2gli_A ! ! +--3 RGSTYGYC--QC--TGSTRAYT-------------------------------------- L ! ! +-------------3uk3_C --7 ! --NTSTNAVTQTSTSGKG--RGKG------------------------------------ L ! +-----------------------6u9q_A ! ----------RG--SGDC------------------------------------------ L +---------------------------5k5l_F |
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updated Fri Sep 13 21:02:44 2024