interface graph thumbnail
legend  pdf

structure nameLARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH THE UNNATURAL BASE M-FC PAIR WITH DATP IN THE ACTIVE SITE
(DNA polymerase I, thermostable)
referenceMondal et al. 'Angew. 58 130 2019
sourceThermus aquaticus
experimentX-ray (resolution=2.28, R-factor=0.197)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A; Taq polymerase, exonuclease;
reference complex6fbc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTRNNQH

Estimated binding specificities ?

contactlogo
# IC=2.689 IC/col=0.672 n_of_columns=4 specificity:   
A |   8   0   8  10
C |  11  96   8  61
G |  69   0  72   8
T |   8   0   8  17
scan!

home
updated Fri Jan 9 05:03:29 2026