interface graph thumbnail
legend  pdf

structure nameLARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH WITH NATURAL DT:DATP BASE PAIR
(DNA polymerase I, thermostable)
referenceMondal et al. 'Angew. 58 130 2019
sourceThermus aquaticus
experimentX-ray (resolution=2.21, R-factor=0.187)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A; Taq polymerase, exonuclease;
reference complex6fbc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTRNNQH

Estimated binding specificities ?

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# IC=2.635 IC/col=0.659 n_of_columns=4 specificity:   
A |   9   0   9   9
C |   9  96  11  67
G |  67   0  67  11
T |  11   0   9   9
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updated Thu Sep 12 22:29:57 2024