interface graph thumbnail
legend  pdf

structure nameLARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH WITH NATURAL DT:DATP BASE PAIR
(DNA polymerase I, thermostable)
referenceMondal et al. 'Angew. 58 130 2019
sourceThermus aquaticus
experimentX-ray (resolution=2.21, R-factor=0.187)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A; Taq polymerase, exonuclease;
reference complex6fbc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTRNNQH

Estimated binding specificities ?

contactlogo
# IC=3.070 IC/col=0.767 n_of_columns=4 specificity:   
A |   9   0   0  19
C |   9  96   9  38
G |  76   0  86  11
T |   2   0   1  28
scan!

home
updated Fri Jan 9 05:03:55 2026