5yzz_C : 3D-footprint complex

structure name	ATVAL1 B3 DOMAIN IN COMPLEX WITH 13BP-DNA (B3 domain-containing transcription repressor VAL1)
reference	Zhang et al. 'Biochem. ? ? 2018
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.58, R-factor=0.228)
structural superfamily	DNA-binding pseudobarrel domain;
sequence family	B3 DNA binding domain;
redundant complexes	5yzy 5z00 6j9a
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5yzz_C interface=16,21,23,25,63,65,66,70, lnlnivplfektlsaSdagrIgRlVlpkacaeayfppisqsegiplkiqdvrgrewtfqfryWpNNnsrMyvlegvtpciqsmmlqagdtvtfsrvdpggklimgsrkaan
interface signature	SIRVWNNM

Estimated binding specificities ?

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# IC=4.122 IC/col=0.687 n_of_columns=6

specificity:

A |   9  87   7   0   7  52
C |  67   3   7   0  75  14
G |   9   3   7  96   7  16
T |  11   3  75   0   7  14

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Dendrogram of similar interfaces ?

matrix format

  
  --STITRGVTWC--NCNG------MA   L                           +5yzz_C    
                                                   +-------1 
  --STHG------RG----PT--RG--   L                   !       +6ycq_A    
                                   +---------------4 
  --ST--RG--WC--NC--------MA   L   !               !     +-6j9c_D    
                                   !               +-----3 
  KASTLTRGITWC--NTNT------MA   L --5                     ! +6j9b_A    
                                   !                     +-2 
  --STHG--ST----RC----PT--RG   L   !                       +6sdg_B    
                                   ! 
  ----ECECIG------------KGNG   L   +-----------------------4rd5_A

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updated Tue Dec 17 03:06:50 2024