5zd4_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MBP-FUSED BIL1/BZR1 IN COMPLEX WITH DOUBLE- STRANDED DNA
reference	Hirabayashi et al. 'Nat 4 771 2018
source	ESCHERICHIA COLI O157:H7, ARABIDOPSIS THALIANA
experiment	X-ray (resolution=2.17, R-factor=?)
structural superfamily	Periplasmic binding protein-like II;
reference complex	7vn3_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5zd4_C interface=371,377,381,384,385,388,389, kieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdiifwahdrfggyaqsgllaeitpaaafqdklypftwdavryngkliaypiavealsliynkdllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyaagkydikdvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsavnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdaalaaaqtnaarRkpswrErenNrrRErrRRavaakiytglraqgdynlpkhcdnnevlkalcveagwvveedgttyr > 5zd4_D interface=346,352,356,359,360,363,364, viwingdkgynglaevgkkfvehpdkleekfpqvaatgdgpdiifwahdrfggyaqsgllqdklypftwdavryngkliaypiavealsliynkdllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyaagkydikdvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsavnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplgavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdaalaaaqtnaarRkpswrErenNrrRErrRRavaakiytglraqgdynlpkhcdnnevlkalcveagwvveedgttyr
interface signature	RENRERR/RENRERR

Estimated binding specificities ?

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# IC=7.026 IC/col=0.703 n_of_columns=10

specificity:

A |   0  24   5  71   0   0   6   5  24   5
C |  90  24  80  15  96   0   0   5  24  16
G |   1  24   5   5   0  96  15  80  24  70
T |   5  24   6   5   0   0  75   6  24   5

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updated Thu Jun 25 11:45:33 2026