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structure nameSOLUTION STRUCTURE OF THE DNA COMPLEX OF THE C-TERMINAL DOMAIN OF ROK
(ROK)
sourceBACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
experimentNMR
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRANTTR

Estimated binding specificities ?

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# IC=6.516 IC/col=0.815 n_of_columns=8 specificity:   
A |   0  61  24  10  96  96   0   0
C |   0  10  24   8   0   0  26   0
G |   0  17  24  17   0   0  61   0
T |  96   8  24  61   0   0   9  96
scan!

Dendrogram of similar interfaces ?

matrix format
  
  RTTTAT--------------------------NT--TCTA----------------------RT--------   L                                   +--------5zux_A    
                                                                                                       +---------5 
  ------------------------------------------------------------------NG----                         +--10         +--------7k63_U    
                                                                                                   !   !  
  --------------------YA------KTPTPG----YTRG------------------------------   L                     !   +------------------4mtd_D    
                                                                                                   !  
  ------------------RC----------------------------------------------SG----                         !                   +-----7cow_T    
                                                                                                +-13     +-------------4 
  ------------------------------------QTNAST--RGNT--STLA------------------   L                  !  !     !             +-----2hdc_A    
                                                                                                !  !  +-11  
  --------------------LT----------NTHG--RT--YTPT------------------RT------   L                  !  !  !  !       +-----------6qil_A    
                                                                                                !  !  !  +-------6 
  --------RT----------LT----------NTHGTA----------------------------------   L                  !  !  !          +-----------2efw_A    
                                                                                                !  +-12  
  ------------RC----------------------------------------------------------                      !     !                   +--6l9z_S    
                                                                                             +-14     !    +--------------3 
  ----------------------------------------RC----YG----------KT------------                   !  !     !    !              +--2acj_B    
                                                                                             !  !     +----9 
  ----------------------------------------------YGRG----------------------                   !  !          !                 +4wcg_A    
                                                                                             !  !          ! +---------------1 
  ----------------------------------------RG----YG------------------------                +-15  !          +-7               +1qbj_C    
                                                                                          !  !  !            ! 
  ----------------------ETNTSCRG--HC----RT--------------------QA----------   L            !  !  !            +---------------5d4s_B    
                                                                                          !  !  !  
  ----------------------------------DTVT----STRG--------------------------   L            !  !  +------------------------6lxn_A    
                                                                                       +-16  !  
  ----------LAHAKARA--------------------------------------------------IAVA             !  !  +--------------------------6dta_A    
                                                                                       !  !  
  ------RT--------------------------RCET------SA----QAKT------------------   L         !  !                        +-6qec_A    
                                                                                    +-17  !          +-------------2 
  ------------------DT--------------RGRCTT----KT------------RT------------   L      !  !  +----------8             +-2o9l_A    
                                                                                    !  !             ! 
  ------RA------------------------------------YA----QTNAAARG--------------   L   +-18  !             +---------------6wig_A    
                                                                                 !  !  !  
  --------------------------------KGTA----TA------RG----------------------   L   !  !  +----------------------------1xsd_A    
                                                                               -19  !  
  ----KGRT------------------------------IA----QCNA----YA------------------   L   !  +----------------------------1nk2_P    
                                                                                 !  
  ------RT----------------------RT------IA----QCNA------------------------   L   +----------------------------5jlw_D    
                                                                               

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updated Thu Sep 12 22:39:36 2024