| structure name | SOLUTION STRUCTURE OF THE DNA COMPLEX OF THE C-TERMINAL DOMAIN OF ROK (ROK) |
| source | BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168 |
| experiment | NMR |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RANTTR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 52 24 8 96 96 8 0 C | 0 8 24 8 0 0 17 0 G | 0 17 24 17 0 0 63 0 T | 96 19 24 63 0 0 8 96scan! |
Dendrogram of similar interfaces ?
matrix formatRTTTAT--------------------------NT--TCTA----------------------RT-------- L +--------5zux_A +---------5 ------------------------------------------------------------------NG---- +--10 +--------7k63_U ! ! --------------------YA------KTPTPG----YTRG------------------------------ L ! +------------------4mtd_D ! ------------------RC----------------------------------------------SG---- ! +-----7cow_T +-13 +-------------4 ------------------------------------QTNAST--RGNT--STLA------------------ L ! ! ! +-----2hdc_A ! ! +-11 --------------------LT----------NTHG--RT--YTPT------------------RT------ L ! ! ! ! +-----------6qil_A ! ! ! +-------6 --------RT----------LT----------NTHGTA---------------------------------- L ! ! ! +-----------2efw_A ! +-12 ------------RC---------------------------------------------------------- ! ! +--6l9z_S +-14 ! +--------------3 ----------------------------------------RC----YG----------KT------------ ! ! ! ! +--2acj_B ! ! +----9 ----------------------------------------------YGRG---------------------- ! ! ! +4wcg_A ! ! ! +---------------1 ----------------------------------------RG----YG------------------------ +-15 ! +-7 +1qbj_C ! ! ! ! ----------------------ETNTSCRG--HC----RT--------------------QA---------- L ! ! ! +---------------5d4s_B ! ! ! ----------------------------------DTVT----STRG-------------------------- L ! ! +------------------------6lxn_A +-16 ! ----------LAHAKARA--------------------------------------------------IAVA ! ! +--------------------------6dta_A ! ! ------RT--------------------------RCET------SA----QAKT------------------ L ! ! +-6qec_A +-17 ! +-------------2 ------------------DT--------------RGRCTT----KT------------RT------------ L ! ! +----------8 +-2o9l_A ! ! ! ------RA------------------------------------YA----QTNAAARG-------------- L +-18 ! +---------------6wig_A ! ! ! --------------------------------KGTA----TA------RG---------------------- L ! ! +----------------------------1xsd_A -19 ! ----KGRT------------------------------IA----QCNA----YA------------------ L ! +----------------------------1nk2_P ! ------RT----------------------RT------IA----QCNA------------------------ L +----------------------------5jlw_D |
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updated Tue Dec 17 03:14:14 2024