6ama_ABCDGHKLOPY : 3D-footprint complex

structure name	STRUCTURE OF S. COELICOLOR/S. VENEZUELAE BLDC-SMEA-SSFA COMPLEX TO 3.09 ANGSTROM
reference	'Nat 9 1139 2018 X-RAY DIFFRACTION
source	Streptomyces venezuelae
experiment	X-ray (resolution=3.09, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ama_A interface=16,18,22,38, eplltpaevatmfrvDpKtvtRwakagkltsirtlggHrryreaevrallagip > 6ama_B interface=17,19,20,23,39, aeplltpaevatmfrvDpKTvtRwakagkltsirtlggHrryreaevrallagip > 6ama_C interface=16,18,19,22,38, eplltpaevatmfrvDpKTvtRwakagkltsirtlggHrryreaevrallagip > 6ama_D interface=16,18,19,22,38, eplltpaevatmfrvDpKTvtRwakagkltsirtlggHrryreaevrallagip > 6ama_G interface=16,18,19,22,38, eplltpaevatmfrvDpKTvtRwakagkltsirtlggHrryreaevrallagip > 6ama_H interface=16,18,19,22,38, eplltpaevatmfrvDpKTvtRwakagkltsirtlggHrryreaevrallagipq > 6ama_K interface=16,18,22,38, eplltpaevatmfrvDpKtvtRwakagkltsirtlggHrryreaevrallagip > 6ama_L interface=16,18,22,38, eplltpaevatmfrvDpKtvtRwakagkltsirtlggHrryreaevrallagip > 6ama_O interface=16,18,22,38, eplltpaevatmfrvDpKtvtRwakagkltsirtlggHrryreaevrallagipq > 6ama_P interface=20,24,40, daeplltpaevatmfrvdpKtvtRwakagkltsirtlggHrryreaevrallagip > 6ama_Y interface=21,22,25,41, pdaeplltpaevatmfrvdpKTvtRwakagkltsirtlggHrryreaevrallagip
interface signature	DKRH/DKTRH/DKTRH/DKTRH/DKTRH/DKTRH/DKRH/DKRH/DKRH/KRH/KTRH

Estimated binding specificities ?

contact

# IC=85.899 IC/col=0.895 n_of_columns=96

specificity:

A |   0  96   0   0   0   0  24  24  24   0  96   0   0   0  24  88  24  24   0  96   0   0   0  24  90  24  24   0  92   0   0   0  24  24  24   7   0  96   0   0   0   1  24  24   4   0  96   0   3   0   0  24  24  24   0  96   0   0   0   6  24  24  24   0  96   0   0   0   8  24  24   0   0  92   0   0   0   1  24  24  24   1  96   0   0   0  24  24  24   7   0  86   0   0   1   0
C |   0   0  95  96  96   0  24  24  24   0   0  96  96  96  24   0  24  24   2   0  96  96  96  24   1  24  24   0   1  96  96  96  24  24  24   7   0   0  96  96  96   0  24  24   1   0   0  96  92  96   0  24  24  24   0   0  94  96  96   0  24  24  24   0   0  96  96  96   3  24  24   0   0   3  96  96  96   1  24  24  24   1   0  96  96  96  24  24  24   3   0   8  96  96  90   0
G |   0   0   1   0   0  96  24  24  24   0   0   0   0   0  24   1  24  24   0   0   0   0   0  24   4  24  24   0   0   0   0   0  24  24  24   3   0   0   0   0   0  94  24  24   1   0   0   0   1   0  96  24  24  24   0   0   1   0   0  90  24  24  24   0   0   0   0   0  82  24  24   3   0   0   0   0   0  94  24  24  24   0   0   0   0   0  24  24  24  10   0   1   0   0   4  96
T |  96   0   0   0   0   0  24  24  24  96   0   0   0   0  24   7  24  24  94   0   0   0   0  24   1  24  24  96   3   0   0   0  24  24  24  79  96   0   0   0   0   1  24  24  90  96   0   0   0   0   0  24  24  24  96   0   1   0   0   0  24  24  24  96   0   0   0   0   3  24  24  93  96   1   0   0   0   0  24  24  24  94   0   0   0   0  24  24  24  76  96   1   0   0   1   0

scan!

home
updated Tue Nov 29 14:26:25 2022