interface graph thumbnail
legend  pdf

structure nameZINC FINGER DOMAIN OF WT1(-KTS FORM) WITH 12+1MER OLIGONUCLEOTIDE WITH 3' TRIPLET TGT
(Wilms tumor protein)
referenceHorton et al. 'Nucleic 46 3864 2018
sourceHomo sapiens
experimentX-ray (resolution=1.55, R-factor=0.193)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
redundant complexes2jp9 2jpa 6b0p 6blw
reference complex2jpa_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKHRDQRRSDHTRDER

Estimated binding specificities ?

readout + contactlogo
# IC=12.848 IC/col=1.168 n_of_columns=11 specificity:   
A |   1   0   0   0   0   0   0  96   0   0  19
C |  19  96   0   0   0   0   0   0   0   0  20
G |  76   0  96   0  96  96  96   0  96   0  38
T |   0   0   0  96   0   0   0   0   0  96  19
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: WILMS TUMOR SUPPRESSOR
GCGGGGGCGPubMed6b0o_A(5.33e-05), 6b0p_A(1.11e-05), 2jp9_A(1.32e-13), ... (total=4)
CGCCCCCGCPubMed6b0o_A(5.33e-05), 6b0p_A(1.11e-05), 2jp9_A(1.32e-13), ... (total=4)
CCCTCPubMed6b0p_A(1.37e-05), 6blw_A(3.68e-06)
TCCTCCTCCTCCTCTCCPubMed6b0p_A(1.19e-02)
GCGGGGGAGPubMed6b0o_A(6.68e-09), 6b0p_A(7.35e-10), 2jp9_A(1.85e-08), ... (total=5)
GGGCGPubMed2jp9_A(2.06e-05), 2jpa_A(1.71e-05)
GGAGAGGGAGGATCPubMed6b0o_A(4.19e-03), 6b0p_A(2.70e-06), 6blw_A(5.92e-04)

Dendrogram of similar interfaces ?

matrix format
  
  --DC--SCQGKTTTAT--SCSC----DC--SGATRARG----RG--DCNA------   L                  +-----------6ml4_A    
                                                                 +--------------6 
  --DC--YCKGRG--QA----TC----RC--SCDC--VT------------------   L   !              +-----------5k5i_A    
                                                                 !  
  --AT--YC------RA----NC------ATSGDC--KG----DCPTSGSARTKG--   L   !  +-------------------------2gli_A    
                                                                 !  !  
  --NG--SGHGRG--DA--SCHGRGRGDC--SCNA--------NCKTSAHG--RG--   L -14  !                            +5ei9_F    
                                                                 !  !                  +---------1 
  --CT--STQTLTITST--STHTRG--RG----EA--RA------TTTGEC--RG--   L   !  !         +--------4         +5v3j_F    
                                                                 !  !         !        ! 
  --EC--SGKGRG--DG--YCKGRG--QA----TC--------RA--SCDC--VT--   L   !  !      +--9        +---------5k5h_A    
                                                                 !  !      !  ! 
  FT----KAYT----WT--WTSTET--FTVASGDC--SARG----------------   L   +-13      !  !       +----------6jnm_A    
                                                                    !      !  +-------5 
  ------------------------RGST--YGYC--------QC--TGSTRGYT--   L      !   +-11          +----------4is1_C    
                                                                    !   !  !  
  --RGSTDTEGRG--RGSGDCHGTT--RG--DAEG--RG------------------   L      !   !  !                     +4x9j_A    
                                                                    !   !  !    +----------------2 
  ------------NGKT--WTKG--------HTHG--RG--TGTT--ACNA--KGRG   L      !   !  +----8                +1tf3_A    
                                                                    !   !       ! 
  --------------------YG----WT--WTST--ET----FTVASGDCSART--   L      +--12       +----------------6a57_A    
                                                                        !  
  --EC--SCKGRG----TCYCKARG--QA----TC--------RA--SCDC--VT--   L          !                  +-----5yeg_A    
                                                                        !       +----------3 
  ------SA--MT--VT----NARG------ETTG--------YG--ST--------              !  +----7          +-----6e94_A    
                                                                        !  !    ! 
  --------------------------QA----TC--RG----RG--YCRT------   L          +-10    +----------------7txc_E    
                                                                           !  
  ------------QT--AG--KGRG--RG--DCKG----------------------   L             +---------------------7n5w_A    
                                                               

home
updated Thu Sep 12 22:48:59 2024