6b0p_A : 3D-footprint complex

structure name	ZINC FINGER DOMAIN OF WT1(-KTS FORM) WITH 12+1MER OLIGONUCLEOTIDE WITH 3' TRIPLET GGT (Wilms tumor protein)
reference	Horton et al. 'Nucleic 46 3864 2018
source	Homo sapiens
experiment	X-ray (resolution=2.08, R-factor=0.190)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	2jpa_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6b0p_A interface=3,16,17,21,48,50,51,54,76,77,78,79,82,106,108,109,112, hmRpfmcaypgcnkrYFklsHlqmhsrkhtgekpyqcdfkdcerrfsRsDQlkRhqrrhtgvkpfqcktcqrkfsRSDHlkThtrthtgekpfscrwpscqkkfaRsDElvRhhnmhq
interface signature	RYFHRDQRRSDHTRDER

Estimated binding specificities ?

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# IC=13.675 IC/col=1.140 n_of_columns=12

specificity:

A |   0   0   0   1   0   0   0  96   0   0  13  15
C |   0  96   0   0   0   0   0   0   0   0  13   0
G |  96   0  96  13  96  96  96   0  96  96  54  13
T |   0   0   0  82   0   0   0   0   0   0  16  68

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updated Thu Sep 12 22:49:04 2024