6bsg_AB : 3D-footprint complex

structure name	STRUCTURE OF HIV-1 RT COMPLEXED WITH RNA/DNA HYBRID IN AN RNA HYDROLYSIS-OFF MODE
reference	Tian et al. 'Proc. 115 507 2018
source	HUMAN IMMUNODEFICIENCY VIRUS 1
experiment	X-ray (resolution=2.44, R-factor=?)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	7ozw_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6bsg_A interface=218,436,462,463,489, pietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaiklvdfrelnkktqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfrkqnpdiviyqymddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwMgyelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlckllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwvpewefvntpplvklwyqlekepivgaetfyvdgaasRetklgkagyvtnkgrqkvvtltdttNQktelqaihlalqdsglevnivtdsqYalgiiqaqpdqseselvnqiieqlikkekvylawvpahkgiggneqvdklvsagir > 6bsg_B interface=389, ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaikkkdgtkwrklvdfrelnkktqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfrkqnpdiviyqymddlyvgsdleigqhrtkieelrqhllrwelhpdkwtvqpivlpekdswtvndiqklvgklnwasqiypgikvrqlckllrgtkalteviplteeaelelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyartndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwvpewefvNtpplvklwyqlekep
interface signature	MRNQY/N

Estimated binding specificities ?

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# IC=5.766 IC/col=0.339 n_of_columns=17

specificity:

A |  13   0   0   0  24   0  24  24  24  24  24  24  24  24  24  24  16
C |  16   0  96  96  24  96  24  24  24  24  24  24  24  24  24  24  13
G |  13  96   0   0  24   0  24  24  24  24  24  24  24  24  24  24  54
T |  54   0   0   0  24   0  24  24  24  24  24  24  24  24  24  24  13

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updated Tue Jan 6 01:24:05 2026