interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF CENP-A NUCLEOSOME IN COMPLEX WITH KINETOCHORE PROTEIN CENP-N
(HISTONE H3-LIKE CENTROMERIC PROTEIN A)
sourceHOMO SAPIENS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3an2_ABCDEFGH 3wtp_ABCDEFGH 6buz_ABCDEFGHN 6c0w_ABCDEFGHK 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6se0_ABCDEFGH 6se6_ABCDEFGH 6see_ABCDEFGH 6sef_ABCDEFGH 6seg_ABCDEFGH 6tem_ABCDEFGH 7d20_ABCDEFGH 7pii_ABCDEFGH 7r5r_ABCDEFGH 7u46_ABCDEFGHK 7u47_ABCDEFGHK 7u47_LMNOPQRSV 7u4d_ABCDEFGHK 7u4d_LMNOPQRS 7ywx_ABCDEFGLNVW
redundant complexes6se0_A 3an2 3wtp 6c0w 6l49 6se6 6see 6sef 6seg 6tem 7d20 7pii 7r5r 7u46 7u47 7u4d 7ywx
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RT----         +-----------------------------8grq_A    
                 +-9 
  LCRT----       ! +-----------------------------8hr1_E    
                 !  
  --RA----       !                           +--7xsx_a    
                 !             +-------------4 
  ----RA--     -10         +---6             +--6g0l_D    
                 !         !   ! 
  --RG----       !       +-7   +----------------8jla_C    
                 !       ! ! 
  --RA----       !       ! !                    +1zla_C    
                 !       ! +--------------------2 
  --RG----       +-------8                      +8ox0_C    
                         ! 
  --RG----               !                     +8txv_G    
                         !      +--------------1 
  --RG----               !      !              +5x0y_G    
                         +------5 
  --RT----                      !             +8u14_G    
                                +-------------3 
  --RA--RA                                    +6a5l_g    
               

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updated Sun Aug 3 10:57:19 2025