6c66_AIKM : 3D-footprint complex

structure name	CRISPR RNA-GUIDED SURVEILLANCE COMPLEX, PRE-NICKING
source	THERMOBIFIDA FUSCA (STRAIN YX) / THERMOBIFIDA FUSCA (STRAIN YX) / THERMOBIFIDA FUSCA (STRAIN YX) / THERMOBIFIDA FUSCA (STRAIN YX) / THERMOBIFIDA FUSCA (STRAIN YX) / THERMOBIFIDA FUSCA (STRAIN YX) / THERMOBIFIDA FUSCA (STRAIN YX) / THERMOBIFIDA FUSCA (STRAIN YX)
experiment	NMR
reference complex	5u07_D 5u0a_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6c66_A interface=178,180,192,302,306,308,368,369,490,492,508,510, ppsfdvtiapwliarsrdvlaapemlglrdvlirshelsdveiplppgaavlwrilalitaritgldqppnknpkrkwqarrsqilskgrldpeavdayfadyserfdlfhperpwlqdprlreecpktsgvnklawgrtagenqvwlgghhhdldphpldsaeavwhllatlgygpSgMctarvvrgrseRnvtagplrgtvsyhplgrtlfeslilnipypgtgaadlafweqpelndplglpeesaglagilrldhfrhavllhpspdgshvvdawvtwawrernispeldpyliyqtSkegRvYprpaeaeraiwrdldallhygedgnyrptildnctplaqvpqevldslrlrafgfdqdgQArdkqwftattpavlrwladretddnenarivrritlarkaaealgrrlekackeawkesnsgpwvqhgmsrywakaepvfwnivydrpaqgytpgmagpgnafnlvalaaydevtgpyceRpRvakvverhrstlfsnWtPk > 6c66_I interface=1,22,25,29,108,130,133, YilqhadalvkrvsklivnepAarAalrRgvglapedprmlaahrvvapyvpvvhaverafyavaaimaaqprsardqeaearrpnlgvslaqavfdkglnadsteqRlhliarqnldgvhrhlprlvlYlrSdqvhidwgilirdlarwghtprhvarewvqdyhrtletltrqae > 6c66_K interface=14,24,27,31,96,118, sdyilqhadalvkRvsklivnepAarAalrRgvmlaahrvvapyvpvhaverafyavaaimaaqprsardqrpnlgvslaqavfdkglnadsteqRlhliarqnldgvhrhlprlvlYlrsdqvhidwgilirdlarwghtprhvarewvqdyhrtletltrqae > 6c66_M interface=171, sgfllrlagpmqswgehsmfgerdtlpypsrsgligmfaaaqgvrrgdpldrykelkftvrvdrpgvrlvdfhtiggglpkertvptaagerrdpkkativtsrsyladavftvavtgpeadtiadalaapywqpylgrrafvpdpllvlrrrvadpvrelveavplphrRveedaatvlvdliyetrtltvlndvplsfdsksrrystrqirvvptevpatlvagpgrdyqnklftyvkqcae
interface signature	SMRSRYQARRWP/YAARRYS/RAARRY/R

Estimated binding specificities ?

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# IC=14.628 IC/col=0.522 n_of_columns=28

specificity:

A |   0  24  24   0  24  24  24  24  24  96   0  24   0  24  24   0  24  24   0   9   9  96   0   0  24  24  24   9
C |  96  24  24  96  24  24  24  24  24   0  96  24   0  24  24  96  24  24   0  67  67   0  96   0  24  24  24  67
G |   0  24  24   0  24  24  24  24  24   0   0  24   0  24  24   0  24  24   0   9   9   0   0   0  24  24  24   9
T |   0  24  24   0  24  24  24  24  24   0   0  24  96  24  24   0  24  24  96  11  11   0   0  96  24  24  24  11

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updated Sat Dec 14 10:11:23 2024