6d8f_A : 3D-footprint complex

structure name	RSAGO TERNARY COMPLEX WITH GUIDE RNA AND TARGET DNA CONTAINING T-T BULGE WITHIN THE SEED SEGMENT (Uncharacterized protein)
reference	Olovnikov et al. 'Cell 24 453 2018
source	Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) / Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
experiment	X-ray (resolution=2.15, R-factor=?)
structural superfamily	Ribonuclease H-like;
sequence family	Piwi domain 478;
reference complex	6d92_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6d8f_A interface=26,44,226,310,322,472,475,476,479,522,587,621,651,668,670,671,673,708,715,716, rqlvsngfevnlpdqvevivrdlpdPskvkeertrlmgywfvhWfdgklfhlrikaggpnvdgehrairtaehpwllrarlddaleealpkyaavkkrpftflaqkdelidaaataaglshrllnsfkviprfalspkiyepvdgttrvgvfvtigmrydieaslrdlleagidlrgmyvvrrkrqpgergllgrvraisddmvqlfeetdlasvnvndaklegsKenftrclsallghnykkllnalddqeagyrtgprfddavrrmgeflakkpirladninaqvgdrivfsnegqarnvrlapkveYvfdrtgaksaeYawrglsqfgpfdrpsfanrsprilvvypsstqgkvenflsafrdgmgsnysgfskgfvdlmgltkvefvmcpvevssadrngahtkynsaiedklagagevhagivvlfedharlpddrnpyihtksllltlgvptqqvrmptvllepkSlqYTlqNfsiatyaklngtpwtvnhdkaindelvvgmglaelsgsrtekRqrfvgittvfagdgsyllgnvskeceyegysdairesmtgilrelkkrnnwrpgdtvrvvfhahRplkrvdvasivfectreigsdqniqmafvtvshDhpfvlidrsergleaykgstarkgvfappRgaisrvgrltrllavnSpQLiKrantplptpllvslhpdstfkdvdylaeqalkftSlswrstLPaatpvtifyseriaellgrlksipnwssanlniklkwsrwfl
interface signature	PWKYYSYTNRRDRSQLKSLP

Estimated binding specificities ?

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# IC=8.912 IC/col=0.469 n_of_columns=19

specificity:

A |   7   0  24  24  24   7   7   0  24  24   0  24  24   7  24  24  24  96  96
C |  73   0  24  24  24  73  73   0  24  24   0  24  24   9  24  24  24   0   0
G |   9  96  24  24  24   9   9   0  24  24  96  24  24  73  24  24  24   0   0
T |   7   0  24  24  24   7   7  96  24  24   0  24  24   7  24  24  24   0   0

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updated Fri Jan 9 05:45:49 2026