6d9k_F : 3D-footprint complex

structure name	TERNARY RSAGO COMPLEX WITH GUIDE RNA AND TARGET DNA CONTAINING A-G NON-CANONICAL PAIR (Uncharacterized protein)
reference	Olovnikov et al. 'Cell 24 453 2018
source	Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) / Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
experiment	X-ray (resolution=2.00, R-factor=0.198)
structural superfamily	Ribonuclease H-like;
sequence family	Piwi domain 478;
reference complex	6d92_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6d9k_F interface=26,44,223,307,319,322,469,472,473,476,584,618,648,665,667,668,670,705,712,713, rqlvsngfevnlpdqvevivrdlpdPskvkeertrlmgywfvhWfdgklfhlrikaggpnvdgehrairtaehpwllrarlddaleealpkyaavkkrpftflaqkdelidaaataaglshrllnsfkviprfalspkiyepvdgttrvgvfvtigmrydieaslrdlleagidlrgmyvvrrkrqrgllgrvraisddmvqlfeetdlasvnvndaklegsKenftrclsallghnykkllnalddqeagyrtgprfddavrrmgeflakkpirladninaqvgdrivfsnegqarnvrlapkveYvfdrtgaksaeYawRglsqfgpfdrpsfanrsprilvvypsstqgkvenflsafrdgmgsnysgfskgfvdlmgltkvefvmcpvevssadrngahtkynsaiedklagagevhagivvlfedharlpddrnpyihtksllltlgvptqqvrmptvllepkSlqYTlqNfsiatyaklngtpwtvnhdkaindelvvgmglaelsgsrtekrqrfvgittvfagdgsyllgnvskeceyegysdairesmtgilrelkkrnnwrpgdtvrvvfhahRplkrvdvasivfectreigsdqniqmafvtvshDhpfvlidrsergleaykgstarkgvfappRgaisrvgrltrllavnSpQLiKrantplptpllvslhpdstfkdvdylaeqalkftSlswrstLPaatpvtifyseriaellgrlksipnwssanlniklkwsrwfl
interface signature	PWKYYRSYTNRDRSQLKSLP

Estimated binding specificities ?

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# IC=9.873 IC/col=0.549 n_of_columns=18

specificity:

A |   6   5  24  24  85   5   0  24  24  24   6  24  24   5  24  96  96   0
C |  80   5  24  24   5  80  96  24  24  24  10  24  24   5  24   0   0  96
G |   5  81  24  24   0   5   0  24  24  24  75  24  24  81  24   0   0   0
T |   5   5  24  24   6   6   0  24  24  24   5  24  24   5  24   0   0   0

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updated Sat Aug 2 10:40:31 2025