6d9l_A : 3D-footprint complex

structure name	TERNARY RSAGO COMPLEX WITH GUIDE RNA AND TARGET DNA CONTAINING G-A NON-CANONICAL PAIR (Uncharacterized protein)
reference	Olovnikov et al. 'Cell 24 453 2018
source	Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) / Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
experiment	X-ray (resolution=2.60, R-factor=0.214)
structural superfamily	Ribonuclease H-like;
sequence family	Piwi domain 478;
reference complex	6d92_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6d9l_A interface=26,44,226,310,321,322,325,472,475,476,479,522,587,621,651,668,670,671,673,708,715,716, rqlvsngfevnlpdqvevivrdlpdPskvkeertrlmgywfvhWfdgklfhlrikaggpnvdgehrairtaehpwllrarlddaleealpkyaavkkrpftflaqkdelidaaataaglshrllnsfkviprfalspkiyepvdgttrvgvfvtigmrydieaslrdlleagidlrgmyvvrrkrqpgergllgrvraisddmvqlfeetdlasvnvndaklegsKenftrclsallghnykkllnalddqeagyrtgprfddavrrmgeflakkpirladninaqvgdrivfsnegqarnvrlapkveYvfdrtgaksaEYawRglsqfgpfdrpsfanrsprilvvypsstqgkvenflsafrdgmgsnysgfskgfvdlmgltkvefvmcpvevssadrngahtkynsaiedklagagevhagivvlfedharlpddrnpyihtksllltlgvptqqvrmptvllepkSlqYTlqNfsiatyaklngtpwtvnhdkaindelvvgmglaelsgsrtekRqrfvgittvfagdgsyllgnvskeceyegysdairesmtgilrelkkrnnwrpgdtvrvvfhahRplkrvdvasivfectreigsdqniqmafvtvshDhpfvlidrsergleaykgstarkgvfappRgaisrvgrltrllavnSpQLiKrantplptpllvslhpdstfkdvdylaeqalkftSlswrstLPaatpvtifyseriaellgrlksipnwssanlniklkwsrwfl
interface signature	PWKYEYRSYTNRRDRSQLKSLP

Estimated binding specificities ?

contact

# IC=11.160 IC/col=0.620 n_of_columns=18

specificity:

A |   4   0  24  24  86   0   4   4  24  24   4  24  24   4  24  96  96   0
C |  84   0  24  24   4  96  74   4  24  24  11  24  24   4  24   0   0  96
G |   4  96  24  24   0   0   9   7  24  24  72  24  24  81  24   0   0   0
T |   4   0  24  24   6   0   9  81  24  24   9  24  24   7  24   0   0   0

scan!

home
updated Sun Jun 28 15:15:13 2026