6dbr_ACD : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RAG IN COMPLEX WITH ONE MELTED RSS AND ONE UNMELTED RSS
reference	Liao et al. 'Nat. 25 732 2018
source	ESCHERICHIA COLI, DANIO RERIO
experiment	X-ray (resolution=4.00, R-factor=?)
structural superfamily	Galactose oxidase, central domain;
reference complex	6dbj_A 6dbj_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dbr_A interface=23,42,45,521,522, fglhpavclairvntflscsqyHkmyrtvkatsgrqifqplHtlRnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsekhgsgpavpekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvmrmngnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnaRQsktfeledilkhhwlytskylqkfmeah > 6dbr_C interface=380,382,383,385, glhpavclairvntflscsqyhkmyrtvkatsgrqifqplhtlrnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsvpekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkPvMRmNgnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnarqsktfeledilkhhwlytskylqkfmeahk > 6dbr_D interface=117, mslqpltavncgslvqpgfslldlegdvylfgqkgwpkrscptgifgvrikkgelklraisfsnnssylpplrcpaiahfeaqdgkpecylihggrtpnnelssslymlsvdsrgcNrkvtlrceekelvgdvpsaryghtlsvinsrgktacvlfggrsymppterttqnwnsvvdcppqvylidlefgcctahtlpeltdgqsfhvalarqdcvyflgghilssdcrpsrlirlhvelllgspvltctilhegltitsaiaspigyheyiifggyqsetqkrmectyvglddvgvhmesreppqwtseishsrtwfggslgkgtalvaipsegnptppeayhfyqvsfq
interface signature	HHRRQ/PMRN/N

Estimated binding specificities ?

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# IC=7.295 IC/col=0.608 n_of_columns=12

specificity:

A |  84  24   6  49  24  24  24  17   0   3   0   0
C |   3  24   3  15  24  24  24  57   0   0   0   0
G |   3  24   3  11  24  24  24   3   0  90   0  96
T |   6  24  84  21  24  24  24  19  96   3  96   0

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updated Tue Jan 6 02:03:27 2026