6dbv_BC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RAG IN COMPLEX WITH 12-RSS AND 23-RSS SUBSTRATE DNAS
reference	Liao et al. 'Nat. 25 732 2018
source	DANIO RERIO / ESCHERICHIA COLI, DANIO RERIO
experiment	X-ray (resolution=4.29, R-factor=?)
structural superfamily	Galactose oxidase, central domain;
reference complex	6dbj_A 6dbj_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dbv_B interface=117, mslqpltavncgslvqpgfslldlegdvylfgqkgwpkrscptgifgvrikkgelklraisfsnnssylpplrcpaiahfeaqdgkpecylihggrtpnnelssslymlsvdsrgcNrkvtlrceekelvgdvpsaryghtlsvinsrgktacvlfggrsymppterttqnwnsvvdcppqvylidlefgcctahtlpeltdgqsfhvalarqdcvyflgghilssdcrpsrlirlhvelllgspvltctilhegltitsaiaspigyheyiifggyqsetqkrmectyvglddvgvhmesreppqwtseishsrtwfggslgkgtalvaipsegnptppeayhfyqvsfq > 6dbv_C interface=3,14,15,18,222,592,593, ggRprqhllsltrRAqkHrlrdlknqvktfaekeeggdvksvcltlfllalragnehkqadeleammqgrgfglhpavclairvntflscsqyhkmyrtvkatsgrqifqplhtlrnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsekHgsgpavpekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvmrmngnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnaRQsktfeledilkhhwlytskylqkfmeah
interface signature	N/RRAHHRQ

Estimated binding specificities ?

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# IC=8.431 IC/col=0.367 n_of_columns=23

specificity:

A |   0  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  54   0  96  24  54  96
C |  96   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  96   0  24  13   0
G |   0   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  16   0   0  24  13   0
T |   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13   0   0  24  16   0

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updated Wed Jul 30 16:12:16 2025