6dbw_ABC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RAG IN COMPLEX WITH 12-RSS SUBSTRATE DNA
reference	Liao et al. 'Nat. 25 732 2018
source	DANIO RERIO / ESCHERICHIA COLI, DANIO RERIO
experiment	X-ray (resolution=4.70, R-factor=?)
structural superfamily	Galactose oxidase, central domain;
reference complex	6dbj_A 6dbj_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dbw_A interface=55,454,455,457, ggrprqhllsltrraqkhrlrdlknqvktfaekeeggdvksvcltlfllalragNehkqadeleammqgrgfglhpavclairvntflscsqyhkmyrtvkatsgrqifqplhtlrnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsvpekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvMRmNgnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnarqsktfeledilkhhwlytskylqkfmeahk > 6dbw_B interface=117, mslqpltavncgslvqpgfslldlegdvylfgqkgwpkrscptgifgvrikkgelklraisfsnnssylpplrcpaiahfeaqdgkpecylihggrtpnnelssslymlsvdsrgcNrkvtlrceekelvgdvpsaryghtlsvinsrgktacvlfggrsymppterttqnwnsvvdcppqvylidlefgcctahtlpeltdgqsfhvalarqdcvyflgghilssdcrpsrlirlhvelllgspvltctilhegltitsaiaspigyheyiifggyqsetqkrmectyvglddvgvhmesreppqwtseishsrtwfggslgkgtalvaipsegnptppeayhfyqvsfq > 6dbw_C interface=3,14,15,18,94,116,584, ggRprqhllsltrRAqkHrlrdlknqvktfaekeeggdvksvcltlfllalragnehkqadeleammqgrgfglhpavclairvntflscsqyHkmyrtvkatsgrqifqplhtlRnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsepekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvmrmngnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnaRqsktfeledilkhhwlytskylqkfmeahkn
interface signature	NMRN/N/RRAHHRR

Estimated binding specificities ?

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# IC=13.084 IC/col=0.523 n_of_columns=25

specificity:

A |   0  96   0  24  24  12   0   4  10  24  24  24  24  24   8   5  24  24  24  96   0  70  24  24  96
C |  96   0  96  24  24  12   0  84   8  24  24  24  24  24  70   0  24  24  24   0  96  10  24  24   0
G |   0   0   0  24  24  14  96   4   8  24  24  24  24  24  10   0  24  24  24   0   0   8  24  24   0
T |   0   0   0  24  24  58   0   4  70  24  24  24  24  24   8  91  24  24  24   0   0   8  24  24   0

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updated Tue Jan 6 02:10:51 2026