6dbx_ABC : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RAG IN COMPLEX WITH 12-RSS SUBSTRATE DNA
reference	Liao et al. 'Nat. 25 732 2018
source	ESCHERICHIA COLI, DANIO RERIO
experiment	X-ray (resolution=4.20, R-factor=?)
structural superfamily	Galactose oxidase, central domain;
reference complex	6dbj_A 6dbj_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6dbx_A interface=55,456,457, ggrprqhllsltrraqkhrlrdlknqvktfaekeeggdvksvcltlfllalragNehkqadeleammqgrgfglhpavclairvntflscsqyhkmyrtvkatsgrqifqplhtlrnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsekhpekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvMRmngnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnarqsktfeledilkhhwlytskylqkfmeah > 6dbx_B interface= mslqpltavncgslvqpgfslldlegdvylfgqkgwpkrscptgifgvrikkgeLklraisfsnnssylpplrcpaiahfeaqdgkpecylihggrtpnnelssslymlsvdsrgcnrkvtlrceekelvgdvpsaryghtlsvinsrgktacvlfggrsymppterttqnwnsvvdcppqvylidlefgcctahtlpeltdgqsfhvalarqdcvyflgghilssdcrpsrlirlhvelllgspvltctilhegltitsaiaspigyheyiifggyqsetqkrmectyvglddvgvhmesreppqwtseishsrtwfggslgkgtalvaipsegnptppeayhfyqvsfq > 6dbx_C interface=3,14,18,94,116,584, ggRprqhllsltrRaqkHrlrdlknqvktfaekeeggdvksvcltlfllalragnehkqadeleammqgrgfglhpavclairvntflscsqyHkmyrtvkatsgrqifqplhtlRnaekellpgfhqfewqpalknvstswdvgiidglsgwtvsvddvpadtisrrfrydvalvsalkdleedimeglreralddsmctsgftvvvkescdgmgdvsepekavrfsftimsisirlegeddgitifqeqkpnselscrplclmfvdesdhetltailgpvvaerkammesrliisvggllrsfrfffrgtgydekmvremegleasgstyictlcdstraeasqnmvlhsitrshdenleryeiwrknpfsesadelrdrvkgvsakpfmetqptldalhcdignatefykifqdeigevyqkpnpsreerrrwrstldkqlrkkmklkpvmrmngnyarrlmtreaveavcelvpseerreallklmdlylqmkpvwrstcpsrdcpdqlcqysynsqqfadllssmfkyrydgkitnylhktlahvpeiverdgsigawasegnesgnklfrrfrkmnaRqsktfeledilkhhwlytskylqkfmeahkn
interface signature	NMR/L/RRHHRR

Estimated binding specificities ?

contact

# IC=4.434 IC/col=0.403 n_of_columns=11

specificity:

A |   0  24  24  24   0   0  24  24  24  54  13
C |   0  24  24  24   0   0  24  24  24  13  16
G |   0  24  24  24  96   0  24  24  24  13  54
T |  96  24  24  24   0  96  24  24  24  16  13

scan!

home
updated Tue Jan 6 02:12:45 2026