6edb_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SRY.HCGAS-21BP DSDNA COMPLEX
reference	Glickman et al. Proc.Natl.Acad.Sci.USA 116 11946 2019
source	HOMO SAPIENS
experiment	X-ray (resolution=3.21, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6edb_A interface=13, klravleklklsRddistaagmvkgvvdhlllrlkcdsafrgvgllntgsyyehvkisapnefdvmfklevpriqleeysntrayyfvkfkrnpkenplsqflegeilsaskmlskfrkiikeeindikdtdvimkrkrggspavtllisekisvditlalesksswpastqeglriqnwlsakvrkqlrlkpfylvpkhakegngfqeetwrlsfshiekeilnnhgksktccenkeekccrkdclklmkylleqlkerfkdkkhldkfssyhvktaffhvctqnpqdsqwdrkdlglcfdncvtyflqclrteklenyfipefnlfssnlidkrskefltkqieyernnefpvfd > 6edb_B interface=2,5,7,8,15,27,31, kRpmNaFIvwsrdqRrkmalenprmrNseiSkqlgyqwkmlteaekwpffqeaqklqamhrekypny
interface signature	R/RNFIRNS

Estimated binding specificities ?

readout + contact

# IC=3.404 IC/col=0.243 n_of_columns=14

specificity:

A |  13   9  24  24  24  24  24  27  27  20  92  74   6  13
C |  14   9  24  24  24  24  24  22  22  34   1   7   6  14
G |  56  69  24  24  24  24  24  25  25  20   1   7   6  56
T |  13   9  24  24  24  24  24  22  22  22   2   8  78  13

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updated Tue Sep 10 12:17:10 2024