6en8_ABE : 3D-footprint complex

structure name	SAFADR IN COMPLEX WITH DSDNA
reference	'Nat 10 1542 2019
source	Sulfolobus acidocaldarius
experiment	X-ray (resolution=3.29, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	6en8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6en8_A interface=41,42,44,46,47, pktekgkeslnkildasveliadkgflstsinditskagvAYgLfYFyfkskhdildeiirqfnrnmryylktytqnldsridvekvgmkkflewmnenkkyykifietqvhrpdiykwhfmklaeryttglseamrrgeiinvdpellsyvligiahmlgkryvlwsnsgltlkqqrdldliienmltpr > 6en8_B interface=34,35,37,39,40, keslnkildsveliadkgflstsinditskagvAYgLfYFyfkskhdildeiirqfnrnmryylktytqnldsridvekvgmkkflewmnenkkyykifietqvhrpdiykwhfmklaeryttglseamrrgeiinvdpellsyvligiahmlgkryvlwsnsgltlkqqrdldliienmltpr > 6en8_E interface=43,44,46,48,49, rapktekgkeslnkildasveliadkgflstsinditskagvAYgLfYFyfkskhdildeiirqfnrnmryylktytqnldsridvekvgmkkflewmnenkkyykifietqvhrpdiykwhfmklaeryttglseamrrgeiinpellsyvligiahmlgkryvlwsnsgltlkqqrdldliienmltpr
interface signature	AYLYF/AYLYF/AYLYF

Estimated binding specificities ?

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# IC=13.407 IC/col=0.838 n_of_columns=16

specificity:

A |   0   9  24  93   0  13  13   4   0  24  93   0   1  24  94  96
C |   0   9  24   1   0  17   9   1   0  24   1   0   1  24   1   0
G |   0  11  24   1   0  15   9   1   0  24   1  96   4  24   1   0
T |  96  67  24   1  96  51  65  90  96  24   1   0  90  24   0   0

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updated Tue Sep 10 12:28:13 2024