6en8_ABE : 3D-footprint complex

structure name	SAFADR IN COMPLEX WITH DSDNA
reference	'Nat 10 1542 2019
source	Sulfolobus acidocaldarius
experiment	X-ray (resolution=3.29, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	6en8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6en8_A interface=41,42,44,46,47, pktekgkeslnkildasveliadkgflstsinditskagvAYgLfYFyfkskhdildeiirqfnrnmryylktytqnldsridvekvgmkkflewmnenkkyykifietqvhrpdiykwhfmklaeryttglseamrrgeiinvdpellsyvligiahmlgkryvlwsnsgltlkqqrdldliienmltpr > 6en8_B interface=34,35,37,39,40, keslnkildsveliadkgflstsinditskagvAYgLfYFyfkskhdildeiirqfnrnmryylktytqnldsridvekvgmkkflewmnenkkyykifietqvhrpdiykwhfmklaeryttglseamrrgeiinvdpellsyvligiahmlgkryvlwsnsgltlkqqrdldliienmltpr > 6en8_E interface=43,44,46,48,49, rapktekgkeslnkildasveliadkgflstsinditskagvAYgLfYFyfkskhdildeiirqfnrnmryylktytqnldsridvekvgmkkflewmnenkkyykifietqvhrpdiykwhfmklaeryttglseamrrgeiinpellsyvligiahmlgkryvlwsnsgltlkqqrdldliienmltpr
interface signature	AYLYF/AYLYF/AYLYF

Estimated binding specificities ?

readout + contact

# IC=13.055 IC/col=0.768 n_of_columns=17

specificity:

A |   0   3  24  86   0   4  24  96  93  61  24  96   4  24  65  96  12
C |   0   0  24   3  96   3  24   0   0  12  24   0   3  24   9   0   9
G |   0   3  24   3   0   3  24   0   3  12  24   0   3  24  12   0  74
T |  96  90  24   4   0  86  24   0   0  11  24   0  86  24  10   0   1

scan!

home
updated Thu Jun 25 13:57:21 2026