6fqs_ABCD : 3D-footprint complex

structure name	3.11A COMPLEX OF S.AUREUS GYRASE WITH IMIDAZOPYRAZINONE T3 AND DNA
reference	Maxwell et al. 'Nucleic 46 4114 2018
source	STAPHYLOCOCCUS AUREUS (STRAIN N315) / STAPHYLOCOCCUS AUREUS (STRAIN N315) / STAPHYLOCOCCUS AUREUS (STRAIN N315) / STAPHYLOCOCCUS AUREUS (STRAIN N315)
experiment	X-ray (resolution=3.11, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fqs_A interface=24,75,76,79,83,166, nernitsemresfldyamsvivaRalpdvrdglkpvhrrilyglneqgmtpdksykksarivgdvmgkyhphgdSSiyEamvRmaqdfsyryplvdgqgnfgsmdgdgaaamrytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgIavgmatnipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiql > 6fqs_B interface=44, kladcsskspeeceiflvegdsaggstksgrdsrtqailplrgKilnvekarldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqpptykglgemnadqlwettmnpehrallqvkledaieadqtfemlmgdvvenrrqfiednavya > 6fqs_C interface=24,75,76,113,165,222,320, nernitsemresfldyamsvivaRalpdvrdglkpvhrrilyglneqgmtpdksykksarivgdvmgkyhphgdSSiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaamRtearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgIavgmatnipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirRayetgrgsiqmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvrkdanasvilnnlykqtplqtSfgvnmialvngrpklinlkealvhylehqktvvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiql > 6fqs_D interface=44, kladcsskspeeceiflvegdsaggstksgrdsrtqailplrgKilnvekarldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlmgdvvenrrqfiednavy
interface signature	RSSERI/K/RSSRIRS/K

Estimated binding specificities ?

contact

# IC=9.612 IC/col=0.565 n_of_columns=17

specificity:

A |  96   0  10  91  10  24  24  24  24  64   5  24   0   0  24  24   0
C |   0   0  16   0  10  24  24  24  24  10   6  24  96   0  24  24   0
G |   0  96  12   5  10  24  24  24  24  12   5  24   0   0  24  24   0
T |   0   0  58   0  66  24  24  24  24  10  80  24   0  96  24  24  96

scan!

home
updated Sat Dec 14 12:26:16 2024