6gmh_ABEUZ : 3D-footprint complex

structure name	STRUCTURE OF ACTIVATED TRANSCRIPTION COMPLEX POL II-DSIF-PAF-SPT6
source	SUS SCROFA / HOMO SAPIENS
experiment	NMR
structural superfamily	Translation proteins SH3-like domain;
reference complex	5oik_Z
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6gmh_A interface=220,281,314,412,804,805,1339, sacplrtikrvqfgvlspdelkrmsvteggikypetteggrpklgglmdprqgviertgrcqtcagnmtecpghfghielakpvfhvgflvktmkvlrcvcffcskllvdsnnpkikdilakskgqpkkrlthvydlckgknggcgryqprirrsglelyaewkkkillspervheifkrisdeecfvlgmepryarpewmivtvlpvpplsvrpavvmQrnqddlthkladivkinnqlrrneqngaaahviaedvkllqfhvatmvdnelpglpramqKsgrplkslkqrlkgkegrvrgnlmgkrvdfsaRtvitpdpnlsidqvgvprsiaanmtfaeivtpfnidrlqelvrrgnsqypgakyiirdngdridlrfhpkpsdlhlqtgykverhmcdgdivifnrqPtlhkmsmmghrvrilpwstfrlnlsvttpynadfdgdemnlhlpqsletraeiqelamvprmivtpqsnrpvmgivqdtltavrkftkrdvflergevmnllmflstwdgkvpqpailkprplwtgkqifsliipghincirthsthpddedsgpykhispgdtkvvvengelimgilckkslgtsagslvhisylemghditrlfysniqtvinnwllieghtigigdsiadsktyqdiqntikkakqdvieviekahnneleptpgntlrqtfenqvnrilndardktgssaqkslseynnfksmvvsgakgskinisqviavvgqqnvegkripfgfkhrtlphfikddygpesrgfvensylagltptefffhamggreglidtavkTAetgyiqrrliksmesvmvkydatvrnsinqvvqlrygedglagesvefqnlatlkpsnkafekkfrfdytneralrrtlqedlvkdvlsnahiqnelerefermredrevlrvifptgdskvvlpcnllrmiwnaqkifhinprlpsdlhpikvvegvkelskklvivngddplsrqaqenatllfnihlrstlcsrrmaeefrlsgeafdwllgeieskfnqaiahpgemvgalaaqslgepatqmtlntfhyagvsaknvtlgvprlkeliniskkpktpsltvfllgqsardaerakdilcrlehttlrkvtantaiyydpnpqstvvaedqewvnvispwllrveldrkhmtdrkltmeqiaekinagfgddlncifnddnaeklvlririmndddvflrciesnmltdmtlqgieqiskvymhlpqtdnkkkiiitedgefkalqewiletdgvslmrvlsekdvdpvrttsndiveiftvlgieavrkalerelyhvisfdgsyvnyrhlallcdtmtcrghlmaitRhgvnrqdtgplmkcsfeetvdvlmeaaahgesdpmkgvsenimlgqlapagtgcfdllldaekckygmeipgapaygawspsvgsgmtpgaagfpsaasd > 6gmh_B interface= eitpdlwqeacwivissyfdekglvrqqldsfdefiqmsvqrivedappidlqaeaqhasppryllkfeqiylskpthwerdgapspmmpnearlrnltysaplyvditktvikegeeqlqtqhqktfigkipimlrstycllngltdrdlcelnecpldpggyfiingsekvliaqekmatntvyvfakkdskyaytgecrsclenssrptstiwvsmLaraigqrivatlpyikqevpiiivfralgfvsdrdilehiiydfedpemmemvkpsldeaFviqeqnvalnfigsrgakpgvtkekrikyakeVlqkemlphvgvsdfcetkkayflgymvhrlllaalgrrelddrdhygnkrldlagpllaflfrgmfknllkevriyaqkfidrgkdfnlelaiktriIsdglkyslatgnwgdqkkahqaragvsqvlnrltfastlshlrrlnspigrdgklakprqlhntlwgmvcpaetpeghavglvknlalmayisvgsqpspilefleewsmenleeispaaiadatkifvngcwvgihkdpeqlmntlrklrrqmdiivsevsmirdirereiriytdagricrpllivekqklllkkrhidqlkereynnyswqdlvasgvveyidtleeetvmlamtpddlqekevaycstythceihpsmilgvcasiipfpdhnqsprntyqsamgkqamgvyitnfhvrmdtlahvlyypqkplvttrsmeylrfrelpaginsivaiasytgynqedsvimnrsavdrgffrsvfyrsykeqeskgfdqeevfekpTRetcqgmrhaiydkldddgliapgvrvsgddviigktvtlptkrdcstflrtsetgivdqvmvtlnqegykfckirvrsvripqigdkfasrhgqkgtcgiqyrqedmpftcegitpdiiinphaipsrmtighlieclqgkvsankgeigdatpfndavnvqkisnllsdygyhlrgnevlyngftgrkitsqifigptyyqrlkhmvddkihsrargpiqilnrqpmegrsrdgglrfgemerdcqiahgaaqflrerlfeasdpyqvhvcnlcgimaiantrthtyecrgcrnktqislvrmpyackllfqelmsmsiaprmmsv > 6gmh_E interface= ddeeetyrlwkirktimqlchdrgylvtqdeldqtleefkaqfgdkpsegrprrtdltvlvahnddptdqmfvffpeepkvgiktikvycqrmqeenitralivvqqgmtpsakqslvdmapkyileqflqqellinitehelvpehvvmtkeevtellaryklrenqlpriqagdpvaryfgikrgqvvkiirpsetagryityrlvq > 6gmh_U interface= xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx > 6gmh_Z interface= dpnlwtvkckigeerataislmrkfiayqftdtplqiksvvapehvkgyiyveaykqthvkqaiegvgnlrlgywnqqmvpikemtdvlkvvkanlkpkswvrlkrgiykddiaqvdyvepsqntislkmipridydrikappqrlfdaekirslggdvasdgdflifegnrysrkgflfksfamsavitegvkptlselekfrehnfqpgdnvevcegElinlqgkilsvdgnkitimpkhedlkdmlefpaqelrkyfkmgdhvkviagrfegdtgliVrveenfvilfsdltmhelkvlprdlqlcsetaSgvdvggqhewgelvqldpqtvgvivrleretfqvlnmygkvvtvrhqavtrkkdnrfavaldseqnnihvkdivkvidgphsgregeirhlfrsfafLhckklvenggmfvcktrhlvlaneligqtvrisqgpykgyigvvkdatestarvelhstcqtisvdrqrlttvg
interface signature	QKRPTAR/LFVITR///EVSL

Estimated binding specificities ?

contact

# IC=5.345 IC/col=0.356 n_of_columns=15

specificity:

A |   8  24  24   0  52   1  24  24  24  24  24  24  24   0   0
C |   8  24  24   0  19  17  24  24  24  24  24  24  24   0   0
G |   2  24  24  96   8  61  24  24  24  24  24  24  24   0  96
T |  78  24  24   0  17  17  24  24  24  24  24  24  24  96   0

scan!

home
updated Sat Dec 14 12:37:37 2024