6go6_A : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'DNA polymerase beta, N-terminal domain-like', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

Dendrogram of similar interfaces ?

matrix format

structure name	TDT CHIMERA (LOOP1 OF POL MU) - TERNARY COMPLEX WITH DOWNSTREAM DSDNA (DNA NUCLEOTIDYLEXOTRANSFERASE,DNA-DIRECTED DNARNA...)
reference	Gerodimos et al. J.Biol.Chem. 294 10579 2019
source	MUS MUSCULUS
experiment	X-ray (resolution=2.09, R-factor=0.204)
structural superfamily	Nucleotidyltransferase;DNA polymerase beta, N-terminal domain-like;PsbU/PolX domain-like;
sequence family	Fingers domain of DNA polymerase lamb; Nucleotidyltransferase domain;
redundant complexes	6go5 6go7
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6go6_A interface=40,42,43,46, kkisqyacqrrttlnnynqlftdaldilaendelrenegScLAfmRassvlkslpfpitsmkdtegipclgdkvksiiegiiedgesseakavlnderyksfklftsvfgvglktaekwfrmgfrtlskiqsdkslrftqmqkagflyyedlvscvnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflitspeatedeeqqllhkvtdfwkqqglllyhqyhrshladsahnlrqrsstmdvfersfcilkldhgrvhseegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherkmmldnhalydrtkrvfleaeseeeifahlgldyiepwerna

  
  --SALTAARTRGRC--------RGEGRGRG                         +6go6_A    
                                                       +-1 
  --SALTAART------------RGEGRGRG                       ! +4qz9_A    
                                                +------3 
  ----LC--RC------RAFT--KTQTRART                !      ! +-6wie_A    
                                       +--------4      +-2 
  HCKG--AG------KG----YG----KARA       !        !        +-5wo0_A    
                                     --5        ! 
  WC--LC----------KA--YCAGNGRCRG       !        +---------2bcq_A    
                                       ! 
  --------------KT----HCVGLCIGRG       +------------------5hrb_A

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updated Mon Dec 18 15:18:38 2023