6ide_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE VIBRIO CHOLERA VQMA-LIGAND-DNA COMPLEX PROVIDES MOLECULAR MECHANISMS FOR DRUG DESIGN
reference	Guo et al. 'J. 294 2580 2019
source	Vibrio cholerae
experiment	X-ray (resolution=2.51, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;PYP-like sensor domain PAS domain;
reference complex	6ide_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ide_A interface=173,174,176, pnhltleqislfkqlpgywgckdlnsvfvyanqaygeliglkraedcigrtdfempsptaacaaefqqqdryvietghsvkvldihpypdghwhahiftktpwrdsqgkiqgtiffgqdltdtailevghwvcratglsttlkltaresevlflllygkkpqhiarvmgisiKTvEgyeaklrskfgalskdqlidlaldrgfgsvipktllrkqlsvvlsdhtip > 6ide_B interface=177,178,180, pnhltleqislfkqlpgywgckdlnsvfvyanqaygeliglkraedcigrtdfempsptaacaaefqqqdryvietghsvkvldihpypdghwhahiftktpwrdsqgkiqgtiffgqdltdtailevghwvcratglststtftlkltaresevlflllygkkpqhiarvmgisiKTvEgyeaklrskfgalskdqlidlaldrgfgsvipktllrkqlsvvlsdht
interface signature	KTE/KTE

Estimated binding specificities ?

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# IC=8.464 IC/col=0.705 n_of_columns=12

specificity:

A |   0   0   0  21  24  24  24  24  21   0   0   0
C |   0   0   0   0  24  24  24  24  42  96  96  96
G |  96  96  96  53  24  24  24  24  21   0   0   0
T |   0   0   0  22  24  24  24  24  12   0   0   0

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updated Tue Sep 10 14:03:33 2024