6imj_AB : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF SE-ASFVLIG:DNA COMPLEX
reference	Chen et al. 'Nat 10 387 2019
source	African swine fever virus
experiment	X-ray (resolution=2.55, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6imj_A interface=89,109, mlnqfpgqysnnifcfppiesetksgkkaswiicvqvvqhntiipitdemfstdvkdavaeiftkffveegavriskmtrvtegknlgKknattvvhqafkdalskynRharqkrrgmippmlvkyfniipktffeeetdpivqrkrngvravacqqgdgcillysrtekeflgldnikkelkqlylfidvrvyldgelylhrkplqwiagqanaktdsselhfyvfdcfwsdqlqmpsnkrqqlltnifkqkedltfihqvenfsvknvdealrlkaqfikegyegaivrnangpyepgynnyhsahlaklkplldaefilvdytqgkkgkdlgailwvcelpnkkrfvvtpkhltyadryalfqkltpalfkkhlygkeltveyaelspgiplqaravgfrepinvleii > 6imj_B interface=89,109,113, mlnqfpgqysnnifcfppiesetksgkkaswiicvqvvqhntiipitdemfstdvkdavaeiftkffveegavriskmtrvtegknlgKknattvvhqafkdalskynRharQkrrgmippmlvkyfniipktffeeetdpivqrkrngvravacqqgdgcillysrtekeflgldnikkelkqlylfidvrvyldgelylhrkplqwiagqanaksselhfyvfdcfwsdqlqmpsnkrqqlltnifkqkedltfihqvenfsvknvdealrlkaqfikegyegaivrnangpyepgynnyhsahlaklkplldaefilvdytqgkkgkdlgailwvcelpnkkrfvvtpkhltyadryalfqkltpalfkkhlygkeltveyaelsptgiplqaravgfrepinvleii
interface signature	KR/KRQ

Estimated binding specificities ?

contact

# IC=4.915 IC/col=0.410 n_of_columns=12

specificity:

A |   7   0  73  24  24  24  24  24  24   7   0   7
C |   7   0   7  24  24  24  24  24  24   9  96   9
G |  73  96   9  24  24  24  24  24  24   7   0  73
T |   9   0   7  24  24  24  24  24  24  73   0   7

scan!

home
updated Sat Dec 14 13:11:24 2024