6is8_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ZMMOC1 D115N MUTANT IN COMPLEX WITH HOLLIDAY JUNCTION (Monokaryotic chloroplast 1)
reference	Zhang et al. Nat.Chem.Biol. 15 1241 2019
source	Zea mays
experiment	X-ray (resolution=1.68, R-factor=0.160)
multimeric complexes	6is8_AB 6jrf_AB 6jrg_AB
redundant complexes	6jrf_B 6jrg_B 8kfr_B 8kfs_B 8kft_B 8kfu_B 8kfv_B 8kfw_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6is8_B interface=36,37,69,70,71,72,74,76,77,106, gwvigvnpdiggaiavlspdgssqvfdnpfvhivvSEvirkrldtksiiqllrgldappgttayieksSPFPtDgKQgwwstgfsyglwiaslvasgfsvvpiasQtwkayfglmrsetpkddsrqaasilfpdkdqslklkkhhgraealllaaygkglvlp
interface signature	SESPFPDKQQ

Estimated binding specificities ?

contact

# IC=5.807 IC/col=0.363 n_of_columns=16

specificity:

A |   0  24  24  24  24  13  24  24  24  24  24  24  16   0   0   0
C |   0  24  24  24  24  13  24  24  24  24  24  24  13  96  96  96
G |  96  24  24  24  24  13  24  24  24  24  24  24  13   0   0   0
T |   0  24  24  24  24  57  24  24  24  24  24  24  54   0   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  STECSGPCFCPG--DC--KGQG------QT   L                          +6is8_B    
                                          +-------------------1 
  --------YC--QCDC--KGQG--------       +--2                   +6kvo_A    
                                       !  ! 
  ----------FA--RTQT----LG------     --3  +--------------------6s16_B    
                                       ! 
  ----KC------------------SCYC--   L   +-----------------------6p7b_B

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updated Fri Sep 13 21:59:37 2024