6j9c_D : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA TRANSCRIPTION FACTOR LEC2- DNA COMPLEX (B3 domain-containing transcription factor LEC2)
reference	Hu et al. Nat.Plants 5 424 2019
source	Arabidopsis thaliana
experiment	X-ray (resolution=3.10, R-factor=0.226)
structural superfamily	DNA-binding pseudobarrel domain;
sequence family	B3 DNA binding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6j9c_D interface=19,26,67,69,74, stfdnkklrvlcekelknSdvgslgRivlpkrdaeanlpklsdkegivvqmrdvfsmqswsfkykfWsNnksrMyvlentgefvkqngaeigdfltiyedesknlyfamngn
interface signature	SRWNM

Estimated binding specificities ?

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# IC=5.400 IC/col=0.900 n_of_columns=6

specificity:

A |  12   0   0  96  24  12
C |  12   0  96   0   0  12
G |  12  96   0   0   0  60
T |  60   0   0   0  72  12

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --ST--RG--WCNC------MA----   L                          +-6j9c_D    
                                                       +--3 
  --STITRGVTWCNCNT----MA----   L                       !  +-6fas_B    
                                                       ! 
  --STITRGVTWCNCNG----MA----   L   +-------------------5    +5yzz_C    
                                   !                   !  +-1 
  --STHG------RG--PT--RG----   L   !                   !  ! +6ycq_A    
                                   !                   +--4 
  KASTLTRGITWCNTNT----MA----   L --6                      ! +6j9b_A    
                                   !                      +-2 
  --STHG--ST--RC--PT--RG----   L   !                        +6sdg_B    
                                   ! 
  ----ECECIG--------KGNGRGLC   L   +------------------------4rd5_A

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updated Fri Sep 13 22:08:50 2024