6kks_A : 3D-footprint complex

structure name	STRUCTURAL INSIGHTS INTO TARGET DNA RECOGNITION BY R2R3-TYPE MYB TRANSCRIPTION FACTOR (Transcription factor WER)
reference	Wang et al. 'Nucleic 48 460 2020
source	Arabidopsis thaliana
experiment	X-ray (resolution=2.15, R-factor=0.215)
structural superfamily	Homeodomain-like;
sequence family	Myblike DNAbinding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6kks_A interface=42,45,46,93,96,97,100,101, neykkglwtveedkilmdyvkahgkghwnriakktglkrcgKscRLrwmnylspnvkrgnfteqeedliirlhkllgnrwsliakrvpgrtdNqvKNywNThlskk
interface signature	KRLNKNNT

Estimated binding specificities ?

readout + contact

# IC=5.807 IC/col=0.968 n_of_columns=6

specificity:

A |  13   0  13   0   0   0
C |  16  96  13   0   0   0
G |  54   0  57  96   0   0
T |  13   0  13   0  96  96

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------KG--RGLC--------NAKGNANTTC--   L                         +6kks_A    
                                                               +-1 
  ------KG--RCEC--NA--DCNCKANANTSTTC   L                     +-2 +1mse_C    
                                                             ! ! 
  ------KG--RAEA------DCNAKGNANTST--   L               +-----4 +-3zqc_A    
                                                       !     ! 
  ------KG--RTEC--------NAKGNANTST--   L               !     ! +-1h8a_C    
                                           +-----------5     +-3 
  --NA--RTQT--EC--------NG--NA------   L   !           !       +-2kdz_A    
                                           !           ! 
  ------KG--RTEC--------NAKGNANTST--   L --7           +--------1h89_C    
                                           ! 
  KT----RG--RTDC----YA--ITKGNAVT----   L   !     +--------------3osg_A    
                                           +-----6 
  RT--STVC--KGDCRG------------------   L         +--------------1w0t_A

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updated Fri Sep 13 22:16:50 2024