6l3g_AB : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR DNA UNWINDING AT FORKED DSDNA BY TWO COORDINATING PIF1 HELICASES
reference	Bharath et al. 'Nat 10 5375 2019
source	Bacteroides sp. AF32-8BH
experiment	X-ray (resolution=3.30, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
reference complex	5fhd_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6l3g_A interface=65,71,72,88,108,146,148,151,228,282,342,358,360,361, milteemqkimnliqddennvfvtgkagsgkttflkylieksgkncivaaptgiaainaggvtlHslfgiPFgpitpydrlenkfseYkvelllkmelliideismvRpdildtidrklrwvyesdepfggvqvvmfgdlfqlppVtKkqEreilsdfydgffffnalvfkrtgfhiveltkifrqtepefinvlnnirnyqvtsdeldllselkdrkineyihictHkadvekinadklgeqeirnydivikdkfpessipcdlhlklrvgarvmslvndSlkgyyngmlgivtalednvitvrmdngrtikferytwsnteeigsctqfpltlawaitiHksqgltfdkiiihvsHtFCpgqlyvalsrcrtlegivsdafitkqmiipeyalidferayksegnyygkrl > 6l3g_B interface=66,72,73,147,149,229,358,360,361, dmilteemqkimnliqddennvfvtgkagsgkttflkylieksgkncivaaptgiaainaggvtlHslfgiPFgpitpydrlenkfseykvelllkmelliideismvrpdildtidrklrwvyesdepfggvqvvmfgdlfqlppVtKkqereilsdfydgffffnalvfkrtgfhiveltkifrqtepefinvlnnirnyqvtsdeldllselkdrkineyihictHkadvekinadklgeqeirnydivikdkfpessipcdlhlklrvgarvmslvndslkgyyngmlgivtalednvitvrmdngrtikferytwsnteigsctqfpltlawaitihksqgltfdkiiihvsHtFCpgqlyvalsrcrtlegivsdafitkqmiipeyalidferayksegnyygkrl
interface signature	HPFYRVKEHSHHFC/HPFVKHHFC

Estimated binding specificities ?

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# IC=14.658 IC/col=0.733 n_of_columns=20

specificity:

A |   0   0   0   0   0  24   0  24  24  24  24  24  24  24  24   0   0   0   0   0
C |   0   0   0   0   0  24   0  24  24  24  24  24  24  24  24  96   0   0   0   0
G |   0   0   0   0   0  24   0  24  24  24  24  24  24  24  24   0  96   0   0   0
T |  96  96  96  96  96  24  96  24  24  24  24  24  24  24  24   0   0  96  96  96

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updated Tue Sep 10 16:13:15 2024