6ne0_BCDEFG : 3D-footprint complex

structure name	STRUCTURE OF DOUBLE-STRANDED TARGET DNA ENGAGED CSY COMPLEX FROM PSEUDOMONAS AERUGINOSA (PA-14)
reference	Santiago-Frangos et al. 'Mol. 74 132 2019
source	PSEUDOMONAS AERUGINOSA UCBPP-PA14
experiment	X-ray (resolution=3.40, R-factor=?)
reference complex	7ecw_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ne0_B interface=83,92, vtdpeallllprlsiqnanaisspltwgfpspgaftgfvhalqrrvgisldieldgvgivchrfeaqisqpagkrtkvfnltRnplnrdgsTaaiveegrahlevslllgvhgdglddhpaqeiarqvqeqagamrlaggsilpwcnerfpapnaellmlggsdeqrrknqrrltrrllpgfalvsreallqqhletlrttlpeattldalldlcrinfepwqvrdkpgwlvpipagynalsplylpgevrnardretplrfvenlfglgewlsphrvaalsdllwyhhaepdkglyrwstprfv > 6ne0_C interface=6,290, lstasVlaferkldpsdalmsagawaqrdasqewpavtvreksqtvdvanlpsdadtlkvrftlrvlggagtpsacndaayrdkllqtvatyvndqgfaelarryahnlanarflwrnrvgaeavevrinhirqgevarawrfdalaiglrdfkadaeldalaeliasglsgsghvllevvafarigdgqevfpsqelktlysvrdaaaihsqkignalrtidtwypdedglgpiavepygsvtsqgkayrqpkqkldfytlldnwvlrdeapaveqqhyvianlirggVfge > 6ne0_D interface=6,8,49,50,69,70,71,72,228,233,234,238,330, lstasVlAferkldpsdalmsagawaqrdasqewpavtvreksvrgtiSNrlktkdrdpakldasiqsPNLQtvdvanlpsdadtlkvrftlrvlggagtpsacndaayrdkllqtvatyvndqgfaelarryahnlanarflwrnrvgaeavevrinhirqgevarawrfdalaiglrdfkadaeldalaeliasglsgsghvllevvafarigdgqevfpsqeliLdkgdKKgqkSktlysvrdaaaihsqkignalrtidtwypdedglgpiavepygsvtsqgkayrqpkqkldfytlldnwvlrdeapaveqqhyvianlirggVfge > 6ne0_E interface=7,51,70,71,72,73,75,229,331, ilstasVlaferkldpsdalmsagawaqrdasqewpavtvreksvrgtisNrlktkdrdpakldasiqsPNLQtVdvanlpsdadtlkvrftlrvlggagtpsacndaayrdkllqtvatyvndqgfaelarryahnlanarflwrnrvgaeavevrinhirqgevarawrfdalaiglrdfkadaeldalaeliasglsgsghvllevvafarigdgqevfpsqeliLdkgdkkgqksktlysvrdaaaihsqkignalrtidtwypdedglgpiavepygsvtsqgkayrqpkqkldfytlldnwvlrdeapaveqqhyvianlirggVfge > 6ne0_F interface=7,46,70,71,72,73,75,229,239,331, ilstasVlaferkldpsdalmsagawaqrdasqewpavtvreksvRgtisnrlktkdrdpakldasiqsPNLQtVdvanlpsdadtlkvrftlrvlggagtpsacndaayrdkllqtvatyvndqgfaelarryahnlanarflwrnrvgaeavevrinhirqgevarawrfdalaiglrdfkadaeldalaeliasglsgsghvllevvafarigdgqevfpsqeliLdkgdkkgqkSktlysvrdaaaihsqkignalrtidtwypdedglgpiavepygsvtsqgkayrqpkqkldfytlldnwvlrdeapaveqqhyvianlirggVfgea > 6ne0_G interface=6,8,45,50,69,70,71,72,228,230,238,330, lstasVlAferkldpsdalmsagawaqrdasqewpavtvreksvRgtisNrlktkdrdpakldasiqsPNLQtvdvanlpsdadtlkvrftlrvlggagtpsacndaayrdkllqtvatyvndqgfaelarryahnlanarflwrnrvgaeavevrinhirqgevarawrfdalaiglrdfkadaeldalaeliasglsgsghvllevvafarigdgqevfpsqeliLdKgdkkgqkSktlysvrdaaaihsqkignalrtidtwypdedglgpiavepygsvtsqgkayrqpkqkldfytlldnwvlrdeapaveqqhyvianlirggVfge
interface signature	RT/VV/VASNPNLQLKKSV/VNPNLQVLV/VRPNLQVLSV/VARNPNLQLKSV

Estimated binding specificities ?

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# IC=35.395 IC/col=1.142 n_of_columns=31

specificity:

A |  96   0   0   0  96   6  96   0   0   0   0   0  96   0  96   0   0  96  96   0   0   0   6   6  24   0  24   0   0  78  78
C |   0   0   0   0   0   6   0  96   0  96   0   0   0  96   0   0  96   0   0   0  96  96  78   6  24  96  24   0   0   6   6
G |   0  96  96   0   0  78   0   0  96   0  96  96   0   0   0   0   0   0   0  96   0   0   6  78  24   0  24   0  96   6   6
T |   0   0   0  96   0   6   0   0   0   0   0   0   0   0   0  96   0   0   0   0   0   0   6   6  24   0  24  96   0   6   6

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updated Tue Jan 6 08:47:00 2026