6ny3_Y : 3D-footprint complex

structure name	CASX TERNARY COMPLEX WITH 30BP TARGET DNA (CASX)
source	DELTAPROTEOBACTERIA BACTERIUM
experiment	NMR
reference complex	6ny1_Y
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ny3_Y interface=22,26,99,102,127,131,165,170,200,204,212,216,459,482,488,494,495,595,618,724,728,730,737,742,770,852, ekrinkirkklsadnatkpvsRsgpMktllvrvmtddlkkrlekrrkkpevmpqvisnnaannlrmllddytkmkeailqvywqefkddhvglmckfaQpaSxxxxxxxxxxxxxxxxxxxxxxxxXxxxXxxxxxxxxxxxxxxxxxxxxxxxxxxxxgkfgqRaldfYsihvtkesthpvkplaqiagnryasgpvgKalsDacmgtiaSflsKyqdiiiehqkvvkgnqkrleslrelagkenleypsvtlppqphtkegvdayneviarvrmwvnlnlwqklklsrddakpllrlkgfpsfpvverrenevdwwntinevkklidakrdmgrvfwsgvtaekrntilegynylpnendhkkrenpkkpakrqfgdlllylekkywgkvfdeaweridkkiagltshiereearnaedaqskavltdwlrakasfvlerlkemdekefyaceiqlQkwygdlrgnpfaveaenrvvdiSgfsigSdghsiQYrnllawkylengkrefyllmnygkkgrirftdgtdikksgkwqgllygggkakvidltfdpddeqliilplafgtrqgrefiwndllsletgliklangRviektiynkkigrdepalfvalTferrevvdpsnikpvnligvargenipavialtdpegcplrigegykekqraiqaakeveqrraggysrkfasksrnladdmvrnsardlfyhavthdavlvfanLsrgFgRqgkrtfMterqYtkmedwltaklayegltsktylsktlaQytsktcsncgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrfshrpvQeqfvcldcghevhaaeqaalniarswlflnsnstefksyksgkqpfvgawqafykrrlkevwk
interface signature	RMQSXXRYKDSKQSSQYRTLFRMYQQ

Estimated binding specificities ?

contact

# IC=15.281 IC/col=0.899 n_of_columns=17

specificity:

A |   0   0   0  96   0   0  24   0  12  24  24  12   6  76   0   0   0
C |   0   0  96   0   0  96  24   0  12  24  24   8  76   8   0  96  96
G |   0   0   0   0   0   0  24   0  60  24  24  64   6   6   0   0   0
T |  96  96   0   0  96   0  24  96  12  24  24  12   8   6  96   0   0

scan!

home
updated Sat Aug 2 13:07:43 2025