6ny3_Y : 3D-footprint complex

structure name	CASX TERNARY COMPLEX WITH 30BP TARGET DNA (CASX)
source	DELTAPROTEOBACTERIA BACTERIUM
experiment	NMR
reference complex	6ny1_Y
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6ny3_Y interface=22,26,99,102,127,131,165,170,200,204,212,216,459,482,488,494,495,595,618,724,728,730,737,742,770,852, ekrinkirkklsadnatkpvsRsgpMktllvrvmtddlkkrlekrrkkpevmpqvisnnaannlrmllddytkmkeailqvywqefkddhvglmckfaQpaSxxxxxxxxxxxxxxxxxxxxxxxxXxxxXxxxxxxxxxxxxxxxxxxxxxxxxxxxxgkfgqRaldfYsihvtkesthpvkplaqiagnryasgpvgKalsDacmgtiaSflsKyqdiiiehqkvvkgnqkrleslrelagkenleypsvtlppqphtkegvdayneviarvrmwvnlnlwqklklsrddakpllrlkgfpsfpvverrenevdwwntinevkklidakrdmgrvfwsgvtaekrntilegynylpnendhkkrenpkkpakrqfgdlllylekkywgkvfdeaweridkkiagltshiereearnaedaqskavltdwlrakasfvlerlkemdekefyaceiqlQkwygdlrgnpfaveaenrvvdiSgfsigSdghsiQYrnllawkylengkrefyllmnygkkgrirftdgtdikksgkwqgllygggkakvidltfdpddeqliilplafgtrqgrefiwndllsletgliklangRviektiynkkigrdepalfvalTferrevvdpsnikpvnligvargenipavialtdpegcplrigegykekqraiqaakeveqrraggysrkfasksrnladdmvrnsardlfyhavthdavlvfanLsrgFgRqgkrtfMterqYtkmedwltaklayegltsktylsktlaQytsktcsncgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxrfshrpvQeqfvcldcghevhaaeqaalniarswlflnsnstefksyksgkqpfvgawqafykrrlkevwk
interface signature	RMQSXXRYKDSKQSSQYRTLFRMYQQ

Estimated binding specificities ?

contact

# IC=16.075 IC/col=0.946 n_of_columns=17

specificity:

A |   0   0   0   4   4  13  24   8  13  96  24   0  96   0   0  96  96
C |   0   0  96   6   4  61  24   6  56   0  24   0   0   0   0   0   0
G |   0   0   0   4  82  13  24  74  13   0  24  96   0   0  96   0   0
T |  96  96   0  82   6   9  24   8  14   0  24   0   0  96   0   0   0

scan!

home
updated Mon Dec 18 17:05:54 2023